Trac February 2011

trac@lists.einsteintoolkit.org

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134 discussions

[Einstein Toolkit] #218: Documentation page should be better organised
by Einstein Toolkit 25 Mar '11

25 Mar '11

#218: Documentation page should be better organised ----------------------------+----------------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: major | Milestone: Component: Cactus website | Version: Keywords: documentation | ----------------------------+----------------------------------------------- The documentation page of the Cactus website, http://cactuscode.org/documentation/ currently consists of a main body of text and a sidebar on the right. The main body contains links to the PDF versions of some of the documentation, and the sidebar contains links to other pieces of documentation, some but not all of which are in the main body as well. I propose that the sidebar is redundant, and not going to be noticed by most people as it is a sidebar, and should be removed. The documentation that is linked to from the sidebar should be linked to from the main part of the page, and the links should be to the HTML versions of the documentation. We could also provide links to the PDF versions as well, if anyone likes them. We could also be more descriptive about what each piece of documentation is. For example, indicating which document new users should start with (User's Guide). -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/218> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #132: TRAC home page does not give a link for ET tickets
by Einstein Toolkit 21 Mar '11

21 Mar '11

#132: TRAC home page does not give a link for ET tickets ----------------------------------+----------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: trivial | Milestone: Component: EinsteinToolkit trac | Version: Keywords: | ----------------------------------+----------------------------------------- The "TRAC home" page in the ET TRAC does not give a hyperlink for Einstein Toolkit tickets. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/132> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #154: docs.einsteintoolkit.org certificate is invalid due to hostname mismatch
by Einstein Toolkit 21 Mar '11

21 Mar '11

#154: docs.einsteintoolkit.org certificate is invalid due to hostname mismatch -------------------------------------+-------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit website | Version: Keywords: | -------------------------------------+-------------------------------------- If I go to https://docs.einsteintoolkit.org I get a certificate warning from my browser because the certificate is for wiki.cct.lsu.edu, not docs.einsteintoolkit.org. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/154> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #273: GetComponents: -p option triggers scalar leaks
by Einstein Toolkit 17 Mar '11

17 Mar '11

#273: GetComponents: -p option triggers scalar leaks ---------------------------+------------------------------------------------ Reporter: bmundim | Owner: eric9 Type: defect | Status: new Priority: major | Milestone: Component: GetComponents | Version: Keywords: scalar leak | ---------------------------+------------------------------------------------ Hi, when using the parallel option, -p, GetComponents, or, better, perl indicates scalar leaks: Scalars leaked: 1 etc... Thanks, Bruno. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/273> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #291: new python simfactory does not overtake the "-roe" option of Cactus is used with submit
by Einstein Toolkit 14 Mar '11

14 Mar '11

#291: new python simfactory does not overtake the "-roe" option of Cactus is used with submit ----------------------------------------------+----------------------------- Reporter: alexander.beck-ratzka@… | Owner: mthomas Type: defect | Status: new Priority: minor | Milestone: ET_2010_11 Component: SimFactory | Version: ET_2010_11 Keywords: | ----------------------------------------------+----------------------------- I my template for RunScript, I have the line: [snip] time ${MPIDIR}/bin/mpirun -v --mca btl openib,self --mca mpi_leave_pinned 0 -np @NUM_PROCS@ -npernode @(@PPN_USED@/@NUM_THREADS@)@ @EXECUTABLE@ -roe -L 3 @PARFILE@ [snip] The option "-roe" will force Cactus to create a log for all processors, and not only for PE0. The Runscript created by this template only contains the line time ${MPIDIR}/bin/mpirun -v --mca btl openib,self --mca mpi_leave_pinned 0 -np 8 -npernode 4 /lustre/AEI/alibeck/s imulations/cactus_test-luca-no-openmp/SIMFACTORY/exe/cactus_test-luca-no- openmp -L 3 /lustre/AEI/alibeck/simulation s/cactus_test-luca-no- openmp/output-0003/TOVMHD_CarpetRegrid2_PPM_HLLE_BSSNMoL.par so the option -roe is missing. I have used simfactory submit (not create-submit) to start the job. If I use "create-submit" the -roe flag is respected. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/291> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #122: Code documentation
by Einstein Toolkit 12 Mar '11

12 Mar '11

#122: Code documentation -------------------------+-------------------------------------------------- Reporter: hinder | Owner: mthomas Type: enhancement | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | -------------------------+-------------------------------------------------- In order to help new developers understand the code, the following would be useful: * Provide some sort of high-level overview of the internal components of simfactory. This could be in the form of a class diagram with annotations indicating what each class does, and its relationship to the other classes (inheritence/object membership etc). There must be tools for doing this for python and generating doxygen-type output. * Within the source code, provide at least a one-line comment for each function indicating what it does. * Ensure that the readmes etc in the repository are up-to-date, or at least remove any out-of-date information. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/122> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #315: SimRestart instance has no attribute 'SimulationDir'
by Einstein Toolkit 11 Mar '11

11 Mar '11

#315: SimRestart instance has no attribute 'SimulationDir' ------------------------+--------------------------------------------------- Reporter: hinder | Owner: mthomas Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- Using r1234, I cannot clean up a simulation on damiana. I get the error: AttributeError: SimRestart instance has no attribute 'SimulationDir' I thought that these things should be picked up by pychecker? [ianhin@login-damiana llama]$ sim2 cleanup --machine datura bbhllama_22a Info: Simfactory command: simfactory2/bin/../lib/sim.py "cleanup" "-- machine" "datura" "bbhllama_22a" Info: Version exported The Simulation Factory: Manage Cactus simulations Info: defs: /home/ianhin/Cactus/llama/simfactory2/etc/defs.ini Info: defs.local: /home/ianhin/Cactus/llama/simfactory2/etc/defs.local.ini Info: Cactus Directory: /home/ianhin/Cactus/llama Info: simenv.COMMAND: cleanup Info: Executing command: cleanup Info: Simulation name: bbhllama_22a Traceback (most recent call last): File "simfactory2/bin/../lib/sim.py", line 141, in ? main() File "simfactory2/bin/../lib/sim.py", line 138, in main CommandDispatch() File "simfactory2/bin/../lib/sim.py", line 105, in CommandDispatch module.main() File "/home/ianhin/Cactus/llama/simfactory2/lib/sim-manage.py", line 335, in main CommandDispatch() File "/home/ianhin/Cactus/llama/simfactory2/lib/sim-manage.py", line 314, in CommandDispatch exec("command_%s()" % command) File "<string>", line 1, in ? File "/home/ianhin/Cactus/llama/simfactory2/lib/sim-manage.py", line 70, in command_cleanup rids = restartlib.GetRestartIds(restart) File "/home/ianhin/Cactus/llama/simfactory2/lib/restartlib.py", line 380, in GetRestartIds simulationdir = restart.SimulationDir AttributeError: SimRestart instance has no attribute 'SimulationDir' -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/315> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #314: File simulation-1298790275.96 should be in SIMFACTORY directory
by Einstein Toolkit 09 Mar '11

09 Mar '11

#314: File simulation-1298790275.96 should be in SIMFACTORY directory ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- A simulation of mine contains a file simulation-1298790275.96. This file should be hidden int he SIMFACTORY directory. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/314> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #200: IDAnalyticBH: Kerr initial data not smooth near z-axis
by Einstein Toolkit 08 Mar '11

08 Mar '11

#200: IDAnalyticBH: Kerr initial data not smooth near z-axis --------------------------------------+------------------------------------- Reporter: bernard.j.kelly@… | Type: defect Status: new | Priority: minor Milestone: ET_2010_11 | Component: Cactus Version: ET_2010_11 | Keywords: Kerr discontinuity --------------------------------------+------------------------------------- The Kerr initial data (in EinsteinInitialData/IDAnalyticBH/src/Kerr.c) has a defect along the z-axis (that is, the spin axis of the hole). The three- metric (for instance) is not smooth across this axis, leading to discontinuities in second spatial derivatives near there. This appears to be due to overly crude safety measures protecting from division by zero when calculating this data. Tweaking these measures for more self-consistency leads to much smoother behaviour. I'm attaching a simple patch that fixes the problem at least for metric_type = physical. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/200> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #306: SimFactory should not delete all .log files when syncing
by Einstein Toolkit 08 Mar '11

08 Mar '11

#306: SimFactory should not delete all .log files when syncing ------------------------+--------------------------------------------------- Reporter: hinder | Owner: mthomas Type: defect | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- In defs.ini, all *.log files are excluded from a sync. These are part of, for example, the AEILocalInterp thorn. I don't think that these should be deleted. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/306> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac February 2011