Trac April 2012

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[Einstein Toolkit] #782: simfactory entry for ET VM
by Einstein Toolkit 17 Apr '12

17 Apr '12

#782: simfactory entry for ET VM ----------------------------------------------+----------------------------- Reporter: knarf | Owner: dcastl2 Type: enhancement | Status: new Priority: major | Milestone: Component: Einstein Toolkit Virtual Machine | Version: Keywords: | ----------------------------------------------+----------------------------- There should be a separate simfactory machine entry for the ET VM. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/782> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #492: Cannot add attachments to tickets "IOError: Client read error (Timeout?) "
by Einstein Toolkit 17 Apr '12

17 Apr '12

#492: Cannot add attachments to tickets "IOError: Client read error (Timeout?) " ----------------------------------+----------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit trac | Version: Keywords: | ----------------------------------+----------------------------------------- This evening I am unable to add attachments to any tickets. After selecting the attachment file, clicking on the button to actually upload it leads to the error message below. This has happened before, but in those cases the attachment was added successfully despite the error message. In this case, no attachment appears. I have tried several times, and none of them worked. Mod_python error: "PythonHandler trac.web.modpython_frontend" Traceback (most recent call last): File "/usr/lib64/python2.4/site-packages/mod_python/apache.py", line 299, in HandlerDispatch result = object(req) File "/usr/lib/python2.4/site-packages/trac/web/modpython_frontend.py", line 149, in handler gateway.run(dispatch_request) File "/usr/lib/python2.4/site-packages/trac/web/wsgi.py", line 89, in run response = application(self.environ, self._start_response) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 481, in dispatch_request return _dispatch_request(req, env, env_error) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 557, in _dispatch_request send_internal_error(env, req, sys.exc_info()) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 635, in send_internal_error description_en = get_description(lambda s, **kw: safefmt(s, kw)) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 631, in get_description req_args=pformat(req.args), sys_info=sys_info, File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 212, in __getattr__ value = self.callbacks[name](self) File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 195, in 'args': lambda req: arg_list_to_args(req.arg_list), File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 212, in __getattr__ value = self.callbacks[name](self) File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 560, in _parse_arg_list fs = cgi.FieldStorage(fp, environ=self.environ, keep_blank_values=True) File "/usr/lib64/python2.4/cgi.py", line 526, in __init__ self.read_multi(environ, keep_blank_values, strict_parsing) File "/usr/lib64/python2.4/cgi.py", line 646, in read_multi environ, keep_blank_values, strict_parsing) File "/usr/lib64/python2.4/cgi.py", line 528, in __init__ self.read_single() File "/usr/lib64/python2.4/cgi.py", line 661, in read_single self.read_lines() File "/usr/lib64/python2.4/cgi.py", line 683, in read_lines self.read_lines_to_outerboundary() File "/usr/lib64/python2.4/cgi.py", line 710, in read_lines_to_outerboundary line = self.fp.readline() File "/usr/lib/python2.4/site-packages/trac/web/modpython_frontend.py", line 50, in readline return self.req.readline(size) IOError: Client read error (Timeout?) -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/492> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #792: Allow users to put tickets in review when they are created
by Einstein Toolkit 17 Apr '12

17 Apr '12

#792: Allow users to put tickets in review when they are created ----------------------------------+----------------------------------------- Reporter: hinder | Owner: Type: enhancement | Status: new Priority: optional | Milestone: Component: EinsteinToolkit trac | Version: Keywords: | ----------------------------------+----------------------------------------- Sometimes a ticket is created with a patch already available for review. Currently, it is necessary to first create the ticket with the attachment, then edit the created ticket and change its status to "review". This leads to two separate email notifications. If possible, the system should be changed to allow the ticket to be created already in the "review" state. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/792> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #533: Want graphical TRAC statistics
by Einstein Toolkit 17 Apr '12

17 Apr '12

#533: Want graphical TRAC statistics -------------------------+-------------------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: optional | Milestone: Component: Other | Version: Keywords: | -------------------------+-------------------------------------------------- It would be nice to have a few graphs on the TRAC front page showing some statistics, e.g. number of important open tickets, mean time before a ticket is closed, etc. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/533> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #358: FAQ entry
by Einstein Toolkit 17 Apr '12

17 Apr '12

#358: FAQ entry ----------------------------+----------------------------------------------- Reporter: knarf | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus website | Version: Keywords: | ----------------------------+----------------------------------------------- For a new FAQ: Q: I get errors like "/usr/include/H5Dpublic.h:145: error: too many arguments to function ‘hid_t H5Dopen1(hid_t, const char*)’" A: The HDF5 library you use is either version 1.6 or defaults to it. If it is version 1.6.x, update to 1.8.x. If it is 1.8.x and it defaults to the 1.6 API version, you might be out of luck, especially on Debian Squeeze systems, see http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=537414. What you can then do is to remove (comment) out the macro H5_USE_16_API_DEFAULT in /usr/include/H5pubconf.h. This isn't pretty, but is really a bug in the package and has to be fixed there. There is no way to switch to the new API on those systems, other than specifying the API version of each symbol separately, which would be even messier. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/358> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #810: setup-silent should accept --optionlist and set it in the newly generated machine file
by Einstein Toolkit 17 Apr '12

17 Apr '12

#810: setup-silent should accept --optionlist and set it in the newly generated machine file -------------------------+-------------------------------------------------- Reporter: knarf | Owner: eschnett Type: enhancement | Status: new Priority: minor | Milestone: ET_2012_05 Component: SimFactory | Version: Keywords: | -------------------------+-------------------------------------------------- The attached patch lets simfactory honor the --optionlist option for setup-silent -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/810> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #784: testsuites failing
by Einstein Toolkit 17 Apr '12

17 Apr '12

#784: testsuites failing ----------------------------------------------+----------------------------- Reporter: knarf | Owner: dcastl2 Type: defect | Status: new Priority: minor | Milestone: Component: Einstein Toolkit Virtual Machine | Version: Keywords: | ----------------------------------------------+----------------------------- Six testsuites fail on one cpu inside the VM currently: CarpetWaveToyNewRecover_test_1proc (from CarpetIOHDF5) CarpetWaveToyRecover_test_1proc (from CarpetIOHDF5) Schwarzschild_EF (from Exact) test_axibrill_nostagger (from IDAxiBrillBH) regression_test (from SphericalHarmonicRecon) arrays (from TestArrays) This is not necessarily a defect of the VM (but might), and should be fixed for the 2012 spring workshop if simple. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/784> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #576: Einstein toolkit installation problems
by Einstein Toolkit 17 Apr '12

17 Apr '12

#576: Einstein toolkit installation problems -----------------------------+---------------------------------------------- Reporter: Vassilios Mewes | Type: defect Status: new | Priority: major Milestone: | Component: Other Version: ET_2011_05 | Keywords: fortran 77 compilation errors -----------------------------+---------------------------------------------- Hello! I am trying to install the Einstein toolkit. I followed the instructions on the wiki (improved tutorial for new users) i am using the following command to build the configuration: ./simfactory/bin/sim build firsttry --thornlist=manifest/einsteintoolkit.th --optionlist=/home/vass/.cactus/config there are compilation errors of F77 sourcefiles, i tried both gfortran and the older g77 compiler, both give me numerous errors. I am using Ubuntu 11.04 x64... this is my configuration file (for some reason, cactus won't find gfortran unless i specify it in the configuration file, which i believe it should?): CPP = cpp FPP = cpp CC = gcc CXX = g++ F77 = gfortran F90 = gfortran ffppflags= -traditional MPI=OpenMPI here are the error messages when trying to build: above here it is building zlib and HDF5 and so on..i think these are all build correctly.. Checking consistency... Creating Thorn-Flesh bindings... Creating implementation bindings... Creating parameter bindings... Creating variable bindings... Creating schedule bindings... Creating function bindings... CST finished. Checking status of thorn Boundary ________________________________________________________________________ Checking status of thorn CoordBase ________________________________________________________________________ ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn ADMCoupling ________________________________________________________________________ Checking status of thorn ADMMacros ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn AEILocalInterp ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn BLAS ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn Fortran ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetLib ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn IOUtil ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetEvolutionMask ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn zlib ________________________________________________________________________ ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetMask ________________________________________________________________________ Checking status of thorn GSL ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetTracker ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn Constants ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CoordGauge ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn SphericalSurface ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn DistortedBHIVP ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn EOSG_Base ________________________________________________________________________ Preprocessing /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/DistortedBHIVP.F ________________________________________________________________________ Compiling /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/DistortedBHIVP.F Preprocessing /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/Stab3d.F Compiling /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/Stab3d.F /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:476.6: 123 format(1x, 'Pars: amp',f8.5,' eta0',f8.5,' c',f8.5,' sigma',f8.5,' 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:476.6: 123 format(1x, 'Pars: amp',f8.5,' eta0',f8.5,' c',f8.5,' sigma',f8.5,' 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:477.6: &n',i3) 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:477.6: &n',i3) 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:519.2: qf(i,j,k) = amp*(1.00000000000000d0+c*cos(phigrd(k))**2)* 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:521.72: $ /sigma**2)))*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:522.2: qfetaeta(i,j,k) = amp*(1.00000000000000d0+c*cos(phigrd(k)) 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:529.72: $ )*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:530.2: qfqq(i,j,k) = amp*(-1.00000000000000d0+n)*n*(1.00000000 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:538.72: $ /sigma**2)))*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:539.2: qfphi(i,j,k) = -2.00000000000000d0*amp*c*cos(phigrd(k))*(exp(- 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:542.72: $ )*sin(phigrd(k))*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:543.2: qfphiphi(i,j,k) = -2.00000000000000d0*amp*c*cos(phigrd(k))**2* 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:548.72: $ sin(phigrd(k))**2*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:105.6: 10 call usermv(cc,cn,cs,ce,cw,ct,cb,x,Ap,im,jm,km) 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:105.6: 10 call usermv(cc,cn,cs,ce,cw,ct,cb,x,Ap,im,jm,km) 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:138.4: 1 continue 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:138.4: 1 continue 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:181.72: goto 10 1 Error: Label 10 referenced at (1) is never defined /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:181.72: goto 10 1 Error: Label 10 referenced at (1) is never defined /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:194.72: if (rnorm .gt. tol) goto 1 1 Error: Label 1 referenced at (1) is never defined make[3]: *** [Stab3d.F.o] Error 1 make[3]: *** Waiting for unfinished jobs.... /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:1289.6: 110 continue 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:1289.6: 110 continue 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:474.17: write(*,123)amp,eta0,c,sigma,n 1 Error: FORMAT label 123 at (1) not defined Checking status of thorn EOSG_Polytrope ________________________________________________________________________ make[3]: *** [DistortedBHIVP.F.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/home/vass/Cactus/configs/firsttry/lib/libthorn_DistortedBHIVP.a] Error 2 make[1]: *** Waiting for unfinished jobs.... as thornlist i am using the einsteintoolkit.th thornlist as downloaded. the compilation errors are not exclusive to the distortedBHIVP file, when i comment this file to be build in the thornlist, other files won't be compiled as well... might be a system error, as i already had problems downloading the toolkit, it wouldn't download completely, but left out LocalInterp and LocalReduce for some strange reason. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/576> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #806: hdf5_recombiner could use version 1.6 of hdf5 API
by Einstein Toolkit 17 Apr '12

17 Apr '12

#806: hdf5_recombiner could use version 1.6 of hdf5 API -------------------------+-------------------------------------------------- Reporter: knarf | Owner: eschnett Type: enhancement | Status: new Priority: major | Milestone: ET_2012_05 Component: Carpet | Version: Keywords: | -------------------------+-------------------------------------------------- The attached patch would make hdf5_recombiner compile with version 1.6 of the HDF5 API, similar to thorns and other tools. It would be nice to apply this also to the ET_2011_10 branch of the ET. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/806> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #714: TmunuBase: stress_energy_storage should be a restricted parameter
by Einstein Toolkit 16 Apr '12

16 Apr '12

#714: TmunuBase: stress_energy_storage should be a restricted parameter -----------------------------------+---------------------------------------- Reporter: bmundim | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: TmunuBase | -----------------------------------+---------------------------------------- Hi, I was trying to use the stress_energy_storage parameter in TmunuBase to determine when to schedule or not a routine calculating the magnetic pressure (and friends). If storage is allocated for Tmunu then the magnetic pressure is calculated in the same routine. Otherwise, a separate routine would calculate the magnetic pressure. Keeping the routines always separate wouldn't be efficient when we do need the calculation and storage of Tmunu. Anyway, in order to do so, I needed to set stress_energy_storage as a restricted parameter (patch attached) in TmunuBase. Is there any reason for keeping this parameter private? Thanks. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/714> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac April 2012