Trac January 2013

trac@lists.einsteintoolkit.org

1 participants
158 discussions

[Einstein Toolkit] #519: Add all ET repositories to TRAC
by Einstein Toolkit 23 May '13

23 May '13

#519: Add all ET repositories to TRAC ----------------------------------+----------------------------------------- Reporter: hinder | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: EinsteinToolkit trac | Version: Keywords: | ----------------------------------+----------------------------------------- TRAC provides integration with version control systems. It has a list of repositories, and specific changesets and files can be referred to in ticket comments and wiki pages using a convenient syntax. Several ET repositories have been added already. I think this feature is useful, and that the remaining repositories should be added. It would be nice if the links were easier to type. I propose omitting the arrangement name from the repositories, as all thorn names are probably unique, and avoiding spaces which require extra quoting. We have several repositories in Git and Mercurial. It would be nice to include those as well. I believe that there are TRAC plugins to accomplish this in the same way as for SVN. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/519> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1232: Improve output format of Carpet timer trees
by Einstein Toolkit 23 May '13

23 May '13

#1232: Improve output format of Carpet timer trees -------------------------+-------------------------------------------------- Reporter: eschnett | Owner: eschnett Type: enhancement | Status: new Priority: minor | Milestone: Component: Carpet | Version: Keywords: | -------------------------+-------------------------------------------------- Marek Blazewicz reports: I was using the timer tree in Carpet. Because it was not too nicely outputted, and I had to format it manually each time, I've fixed it ;). -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1232> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1184: Update ubuntu.cfg
by Einstein Toolkit 23 May '13

23 May '13

#1184: Update ubuntu.cfg -------------------------+-------------------------------------------------- Reporter: eschnett | Owner: eschnett Type: enhancement | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | -------------------------+-------------------------------------------------- I suggest to update ubuntu.cfg: - remove some outdated comments - consolidate Fortran line length options - add -ffast-math - correct Fortran OpenMP flag - move -rdynamic to LDFLAGS - add -Wall {{{ $ svn diff ubuntu.cfg Index: ubuntu.cfg =================================================================== --- ubuntu.cfg (revision 1854) +++ ubuntu.cfg (working copy) @@ -19,38 +19,32 @@ CPPFLAGS = -DMPICH_IGNORE_CXX_SEEK FPPFLAGS = -traditional -# no -msse3 -CFLAGS = -g3 -march=native -std=gnu99 -rdynamic -CXXFLAGS = -g3 -march=native -std=gnu++0x -rdynamic +CFLAGS = -g3 -march=native -std=gnu99 +CXXFLAGS = -g3 -march=native -std=gnu++0x F77FLAGS = -g3 -march=native -fcray-pointer -ffixed-line-length-none -F90FLAGS = -g3 -march=native -fcray-pointer -ffixed-line-length-none -LDFLAGS = +F90FLAGS = -g3 -march=native -fcray-pointer -ffixed-line-length-none -ffree-line-length-none +LDFLAGS = -rdynamic -LIBDIRS = +LIBDIRS = C_LINE_DIRECTIVES = yes F_LINE_DIRECTIVES = yes -# -check-uninit fails for asm output operands DEBUG = no CPP_DEBUG_FLAGS = -DCARPET_DEBUG FPP_DEBUG_FLAGS = -DCARPET_DEBUG C_DEBUG_FLAGS = -O0 CXX_DEBUG_FLAGS = -O0 -F77_DEBUG_FLAGS = -O0 -ffixed-line-length-none -F90_DEBUG_FLAGS = -O0 -ffree-line-length-none +F77_DEBUG_FLAGS = -O0 +F90_DEBUG_FLAGS = -O0 -# On Abe, the options -O3, -xT, and -ip lead to segmentation faults -# near MPI calls -# With Intel 9, using -ip prevents debug information for local variables -# With Intel 9, using -O3 leads to very long compile times (> 45 minutes) OPTIMISE = yes CPP_OPTIMISE_FLAGS = -DKRANC_VECTORS # -DCARPET_OPTIMISE -DNDEBUG FPP_OPTIMISE_FLAGS = # -DCARPET_OPTIMISE -DNDEBUG -C_OPTIMISE_FLAGS = -O2 -CXX_OPTIMISE_FLAGS = -O2 -F77_OPTIMISE_FLAGS = -O2 -F90_OPTIMISE_FLAGS = -O2 +C_OPTIMISE_FLAGS = -O2 -ffast-math +CXX_OPTIMISE_FLAGS = -O2 -ffast-math +F77_OPTIMISE_FLAGS = -O2 -ffast-math +F90_OPTIMISE_FLAGS = -O2 -ffast-math PROFILE = no CPP_PROFILE_FLAGS = @@ -62,21 +56,23 @@ OPENMP = no CPP_OPENMP_FLAGS = -fopenmp -FPP_OPENMP_FLAGS = -D_OPENMP +FPP_OPENMP_FLAGS = -fopenmp C_OPENMP_FLAGS = -fopenmp CXX_OPENMP_FLAGS = -fopenmp F77_OPENMP_FLAGS = -fopenmp F90_OPENMP_FLAGS = -fopenmp WARN = yes -CPP_WARN_FLAGS = -FPP_WARN_FLAGS = -C_WARN_FLAGS = -CXX_WARN_FLAGS = -F77_WARN_FLAGS = -F90_WARN_FLAGS = +CPP_WARN_FLAGS = -Wall +FPP_WARN_FLAGS = -Wall +C_WARN_FLAGS = -Wall +CXX_WARN_FLAGS = -Wall +F77_WARN_FLAGS = -Wall +F90_WARN_FLAGS = -Wall -MPI_DIR = /usr + + +MPI_DIR = /usr MPI_INC_DIRS = /usr/include/mpich2 MPI_LIB_DIRS = /usr/lib MPI_LIBS = mpich fmpich mpl }}} -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1184> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #650: User is not asked for Mercurial authentication information initially
by Einstein Toolkit 23 May '13

23 May '13

#650: User is not asked for Mercurial authentication information initially ---------------------------+------------------------------------------------ Reporter: hinder | Owner: eric9 Type: defect | Status: new Priority: major | Milestone: Component: GetComponents | Version: Keywords: | ---------------------------+------------------------------------------------ When running GetComponents without the "-a" (anonymous) option, the user is asked initially for authentication information for any authenticated repositories. However, the Carpet repository is not included in this list. This leads to the authentication prompt much later when Carpet is actually being checked out, and here it is not possible to say "anonymous". I believe the problem occurs on line 846 of GetComponents: {{{ # if AUTH_URL is defined we want to find the username: if ( defined( $component->{AUTH_URL} ) and ( $component->{TYPE} eq 'cvs' or $component->{TYPE} eq 'svn' or $component->{TYPE} eq 'darcs' or $component->{TYPE} eq 'git' ) ) { }}} where Mercurial (hg) is not included in that list. The attached (untested) patch adds hg to that list, but I don't know if this is sufficient to fix the problem. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/650> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1229: provide downloadable tarball of ET
by Einstein Toolkit 22 May '13

22 May '13

#1229: provide downloadable tarball of ET -------------------------------------+-------------------------------------- Reporter: rhaas | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: EinsteinToolkit website | Version: Keywords: | -------------------------------------+-------------------------------------- I created a mock up download page (with one paragraph changed) with a tar ball of the current release version of the ET. http://www.tapir.caltech.edu/~rhaas/ET/ To provide the tarball we would need some way to store data on the web- sever that is not archived via svn (or live with ~200MB commmits). Alternatively I am happy to have the tarball live in in my webspace and keep the link though a more "permanent" storage site might be more useful. The tarball would need to be updated whenever the release branch(es) change. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1229> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1221: Reduction weight anomaly when using zero CoordBase::boundary_shiftout_*
by Einstein Toolkit 17 May '13

17 May '13

#1221: Reduction weight anomaly when using zero CoordBase::boundary_shiftout_* ------------------------+--------------------------------------------------- Reporter: bentivegna | Owner: eschnett Type: defect | Status: new Priority: minor | Milestone: Component: Carpet | Version: development version Keywords: | ------------------------+--------------------------------------------------- When using a refinement level that covers the entire grid, and setting the CoordBase::boundary_shiftout_* parameters to zero, the following warning appears: INFO (CarpetReduce): Simulation domain volume: 8000 INFO (CarpetReduce): Additional excised volume: 0 INFO (CarpetReduce): Reduction weight sum: 9141 WARNING level 1 in thorn CarpetReduce processor 0 host socket.local (line 137 of /Users/bennie/CactusTrees/TrueAMR/arrangements/Carpet/CarpetReduce/src/mask_test.c): -> Simulation domain volume and reduction weight sum differ This can be reproduced using the attached parameter file. The problem seems to arise at the boundaries of the restricted region: I would expect the coarse grid to carry zero reduction weight everywhere (as it does if the shiftout is one), but the boundaries have a non-zero weight instead, which leads to double counting, and hence the difference between domain volume and weight sum. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1221> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1171: WeylScal4 schedule order is incorrect
by Einstein Toolkit 17 May '13

17 May '13

#1171: WeylScal4 schedule order is incorrect -----------------------------------+---------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: WeylScal4 testsuite | -----------------------------------+---------------------------------------- WeylScal4 contains a calculation for computing the I and J invariants from the Psis. This calculation is not scheduled explicitly after the Psis. Therefore, Cactus will probably schedule the routines alphabetically, which should be wrong. This should be corrected either with an After or Schedule element in the calculation. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1171> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #283: Update and make CoreDoc.pdf available in the EinsteinToolkit website
by Einstein Toolkit 10 May '13

10 May '13

#283: Update and make CoreDoc.pdf available in the EinsteinToolkit website -------------------------------------+-------------------------------------- Reporter: bmundim | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: EinsteinToolkit website | Version: Keywords: | -------------------------------------+-------------------------------------- The advanced concepts document: http://cactuscode.org/documentation/CoreDoc.pdf should be updated and made available in the ET website, both in pdf and html. Does anyone know where its .tex file version is located? Thanks, Bruno. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/283> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #931: CartGrid3D's dependency on Boundary
by Einstein Toolkit 10 May '13

10 May '13

#931: CartGrid3D's dependency on Boundary --------------------+------------------------------------------------------- Reporter: jtao | Owner: Type: defect | Status: new Priority: minor | Milestone: Cactus_4.1.0 Component: Cactus | Version: Cactus_4.0.0 Keywords: | --------------------+------------------------------------------------------- CartGrid3D_ApplyBC in CartGrid3D is scheduled in BoundaryConditions, which is defined in the Boundary thorn. I can see that this is related with the symmetric boundary conditions but could we handle it in boundary ? It seems to me that it is not a good idea to have the grid thorn depend on the boundary thorn. While making boundary depending on grid is more reasonable if we have to introduce the dependency between these two thorns. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/931> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #808: testsuites in HDF5
by Einstein Toolkit 10 May '13

10 May '13

#808: testsuites in HDF5 -------------------------+-------------------------------------------------- Reporter: jtao | Owner: Type: enhancement | Status: new Priority: optional | Milestone: Cactus_4.1.0 Component: Cactus | Version: development version Keywords: | -------------------------+-------------------------------------------------- Instead of constructing tools to compare Carpet ascii output from multiple processes, how about building tools to diff files HDF5 ? Compared to ASCII: HDF5 testsuites may have several advantages: small, fast, portable, independent of number of process. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/808> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac January 2013