Trac December 2017

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[Einstein Toolkit] #2022: thorn guide on et website links to pdf pages
by Einstein Toolkit 23 Dec '17

23 Dec '17

#2022: thorn guide on et website links to pdf pages -------------------------------------+-------------------------------------- Reporter: rhaas | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit website | Version: development version Keywords: | -------------------------------------+-------------------------------------- This is a continuation #2010 which was about the thorn guide being missing. This one is about the link behind "Thorn Guide" on http://einsteintoolkit.org/documentation.html, namely http://einsteintoolkit.org/thornguide/ points to an auto-generated index page of a directory of pdf files. Instead of the correct HTML page for a table of content pointing to html pages of documentation. Likely requires web server access to fix. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2022> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #2030: Multi-block boundaries leave uninitialized boundary points
by Einstein Toolkit 23 Dec '17

23 Dec '17

#2030: Multi-block boundaries leave uninitialized boundary points -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit thorn | Version: development version Keywords: | -----------------------------------+---------------------------------------- Applying multi-block boundaries can leave uninitialized boundary points. This happens when multi-block boundaries are used in combination with another boundary condition that looks at the interior of the grid, such as e.g. a symmetry condition or radiative / extrapolating boundaries. There is another bug currently in McLachlan that applies its "scalar" boundary conditions to too few grid points (it uses "BoundaryNoSync" instead of "Boundary"), which means there are uninitialized boundary points for {{{initial_boundary_condition = "scalar"}}} as well in multi- block systems. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2030> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #2053: simfactory's hard-coded rsync options override a mdb entry's rsyncopts
by Einstein Toolkit 23 Dec '17

23 Dec '17

#2053: simfactory's hard-coded rsync options override a mdb entry's rsyncopts ------------------------+--------------------------------------------------- Reporter: rhaas | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: SimFactory | Version: development version Keywords: | ------------------------+--------------------------------------------------- Right now, in line 165 of simfactory/lib/sim-sync.py {{{ cmd = "%s --rsh=%s --rsync-path=%s %s %s %s" % (rsynccmd, simlib.QuoteSafe(sshcmd), simlib.QuoteSafe(machineEntry.rsynccmd), rsyncopts, machineEntry.rsyncopts, arguments) cmd = "%s %s" % (cmd, " ".join(rsyncoptions)) }}} the hard-coded set of options in rsycnoptions {{{ rsyncoptions = [ '--checksum', '--compress', '--delete', '--hard-links', '--links', '--partial', '--perms', '--progress', '--recursive', '--sparse', '--stats', #'--times', '--verbose'] }}} overwrites the options passed in via the mdb (machineEntry.rsyncopts) since it appears later on the commmand line. This is (currently) an issue for minerva, whose file system does not support hard-links, since there is no way to pass in a {{{--no-hard-links}}} option for just minerva. Typically we don't have hard-links in our code trees, though it is certainly not something that is expected to never happen (eg I do have some hard links). -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2053> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #2060: Parallel checkout fails on systems with threading missing from the perl installation
by Einstein Toolkit 13 Dec '17

13 Dec '17

#2060: Parallel checkout fails on systems with threading missing from the perl installation ---------------------------+------------------------------------------------ Reporter: diener | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: GetComponents | Version: development version Keywords: | ---------------------------+------------------------------------------------ One of the participants at the EinsteinToolkit workshop tried to checkout Cactus on a machine she had access to. Apparently threading was missing from the perl installation and checking out with --parallel failed with the error: Can't call method "enqueue" on an undefined value at ./GetComponents line 1025. Checking out serially works. This suggests that some check for the threading is missing or not taken into account properly. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2060> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1753: hwloc: move pkg-config based detection into Search phase
by Einstein Toolkit 13 Dec '17

13 Dec '17

#1753: hwloc: move pkg-config based detection into Search phase -----------------------------------+---------------------------------------- Reporter: rhaas | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: development version Keywords: hwloc | -----------------------------------+---------------------------------------- the attacheched patch changes detect.sh such that pkg-config is treated on the same footing as the search at commonly known places. It also adds the option for the user to specify HWLOC_LIBS rather than hard-coding it to hwloc. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1753> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #2090: GetComponents should not prompt in a Jupyter notebook
by Einstein Toolkit 07 Dec '17

07 Dec '17

#2090: GetComponents should not prompt in a Jupyter notebook ---------------------------+------------------------------------------------ Reporter: sbrandt | Owner: Type: defect | Status: new Priority: unset | Milestone: Component: GetComponents | Version: development version Keywords: | ---------------------------+------------------------------------------------ GetComponents should only prompt if it is in a terminal and not in a Jupyter notebook. The following patch addresses this issue. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2090> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac December 2017