Users September 2019

users@lists.einsteintoolkit.org

21 participants
39 discussions

symmetries and IllinoisGRMHD
by Haas, Roland 13 Sep '19

13 Sep '19

Hello all, since this came up at the ET meeting in London: can someone please remind me what the support for (Cactus) symmetries in IllinoisGRMHD is? My recollection is that, due to the way that the staggered field work, that none of the ReflectionSymmetry, RotatingSymmetry90, RotatingSymmetry180 thorns could be used with the staggered vector (and scalar) potentials. Is this correct? Yours, Roland -- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .

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HDF5 and submission/runtime issues on a PBS cluster
by Vaishak P 13 Sep '19

13 Sep '19

Dear all, I am herewith attaching a document ( etk_setup_errors) and some relevant attachments concerning the issues I am facing in setting up ETK. I am looking forward to your help and support! Thanks -- Regards, Vaishak P PhD Scholar, Shyama Prasad Mukherjee Fellow Inter-University Center for Astronomy and Astrophysics (IUCAA) Pune, India

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meeting minutes for 2019-09-12
by Haas, Roland 12 Sep '19

12 Sep '19

Present: Bill, Chris, Maria, Peter, Roland, Steve, Yosef software citation project: * can be used to find citations for open source software used in papers * the ET has some support for this ET release Modules to include: * Peter's self-force code ** Steve is reviewing ** Peter is creating a testsuite, work in progress * Fishbone-Moncrief disk by Zach ** in master thornslist ** compiles and passes its tests ** needs review * create tickets for review of the new modules Release team: * gallery runners: Sam, possibly students at KCL * Helvi, Peter, Roland, Steve * timeline: freeze on Sept 26, testing of machines after that * need a name * update release page on wiki: https://docs.einsteintoolkit.org/et-docs/Release_Details Failing tests: * Carpet.64k2/1procs * Carpet.64k2/2procs * CT_MultiLevel.boostedpuncture/2procs KCL meeting * videos not yet available, will be eventually * some interesting discussion with GRChombo developers * some interesting non-compact object talks eg on using hyperboloidal slices * postpone detailed discussion to next week's call Next ET meeting * next US meeting will be at LSU, organized by Steve * travel funds will be limited due to coming out of "leftover" funds * data to be decided DOI for ET release * please contact Steve if you have / know of an ORCID that is not listed in http://einsteintoolkit.org/developers.html Issues recovering using ManualTopology * see http://lists.einsteintoolkit.org/pipermail/users/2019-September/007009.html * Steve suggested enabling Carpet's verbose and veryverbose options to show which functions are scheduled * would like a test suite case for this once it is fixed Yours, Roland -- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .

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user map code
by Haas, Roland 11 Sep '19

11 Sep '19

Hello Niels, after the discussion at the ET meeting in London last week, would you mind sharing the scripts (or instructions if you have any) that were used to produce the user map at: https://bhptoolkit.org/users.html For the ET we would like to have a similar life map: https://trac.einsteintoolkit.org/ticket/260 It seems that Google's API can find out the location based on the names (at least based on the original simple MMA script that was used at NCSA). Yours, Roland -- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .

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errors while compiling Einstein toolkit
by Mattia 11 Sep '19

11 Sep '19

After the compilation I get the following list of errors: CST error 1: -> Missing thorn ExternalLibraries/BLAS CST error 2: -> Missing thorn ExternalLibraries/FFTW3 CST error 3: -> Missing thorn ExternalLibraries/GSL CST error 4: -> Missing thorn ExternalLibraries/HDF5 CST error 5: -> Missing thorn ExternalLibraries/hwloc CST error 6: -> Missing thorn ExternalLibraries/LAPACK CST error 7: -> Missing thorn ExternalLibraries/libjpeg CST error 8: -> Missing thorn ExternalLibraries/LORENE CST error 9: -> Missing thorn ExternalLibraries/MPI CST error 10: -> Missing thorn ExternalLibraries/OpenSSL CST error 11: -> Missing thorn ExternalLibraries/PAPI CST error 12: -> Missing thorn ExternalLibraries/pthreads CST error 13: -> Missing thorn ExternalLibraries/zlib CST error 14: -> Thorn 'CT_MultiLevel' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CT_MultiLevel' from it ! CST error 15: -> Thorn 'Carpet' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'Carpet' from it ! CST error 16: -> Thorn 'CarpetIOHDF5' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'CarpetIOHDF5' from it ! CST error 17: -> Thorn 'CarpetInterp' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetInterp' from it ! CST error 18: -> Thorn 'CarpetLib' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetLib' from it ! CST error 19: -> Thorn 'CarpetReduce' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetReduce' from it ! CST error 20: -> Thorn 'EOS_Omni' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'EOS_Omni' from it ! CST error 21: -> Thorn 'GiRaFFEfood' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'GiRaFFEfood' from it ! CST error 22: -> Thorn 'Hydro_RNSID' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'Hydro_RNSID' from it ! CST error 23: -> Thorn 'IOHDF5' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'IOHDF5' from it ! CST error 24: -> Thorn 'IOHDF5Util' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'IOHDF5Util' from it ! CST error 25: -> Thorn 'IOJpeg' requires the capability 'libjpeg'. Please add a thorn that provides 'libjpeg' to your ThornList or remove 'IOJpeg' from it ! CST error 26: -> Thorn 'Interpolate2' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'Interpolate2' from it ! CST error 27: -> Thorn 'LlamaWaveToy' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'LlamaWaveToy' from it ! CST error 28: -> Thorn 'Meudon_Bin_BH' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Bin_BH' from it ! CST error 29: -> Thorn 'Meudon_Bin_NS' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Bin_NS' from it ! CST error 30: -> Thorn 'Meudon_Mag_NS' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Mag_NS' from it ! CST error 31: -> Thorn 'NullNews' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'NullNews' from it ! CST error 32: -> Thorn 'QuasiLocalMeasures' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'QuasiLocalMeasures' from it ! CST error 33: -> Thorn 'SphericalHarmonicDecomp' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicDecomp' from it ! CST error 34: -> Thorn 'SphericalHarmonicDecomp' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'SphericalHarmonicDecomp' from it ! CST error 35: -> Thorn 'SphericalHarmonicRecon' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicRecon' from it ! CST error 36: -> Thorn 'SphericalHarmonicRecon' requires the capability 'FFTW3'. Please add a thorn that provides 'FFTW3' to your ThornList or remove 'SphericalHarmonicRecon' from it ! CST error 37: -> Thorn 'SphericalHarmonicRecon' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'SphericalHarmonicRecon' from it ! CST error 38: -> Thorn 'SphericalHarmonicReconGen' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicReconGen' from it ! CST error 39: -> Thorn 'SystemTopology' requires the capability 'hwloc'. Please add a thorn that provides 'hwloc' to your ThornList or remove 'SystemTopology' from it ! CST error 40: -> Thorn 'SystemTopology' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'SystemTopology' from it ! CST error 41: -> Thorn 'TGRtensor' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'TGRtensor' from it ! CST error 42: -> Thorn 'TwoPunctures' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'TwoPunctures' from it ! CST error 43: -> Thorn 'TwoPunctures_KerrProca' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'TwoPunctures_KerrProca' from it !

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Simulation tools' problem in loading binary data
by Hassan Khalvati 09 Sep '19

09 Sep '19

Hello, I am using simulation tools in Mathematica to extract and visualize my simulation results and thanks to Ian, and Barry, it is really helpful. but I have just faced a problem in checking the binary separation. that is when I am asking to ReadBinarySeparation from my simulations, it is posting an error: "Plus cannot operate on DataTables with different coordinates. To allow this, use the WithResampling function." and I have tested for 3 different simulation results and all have the same error message. But if I am replacing the "BH_diagnostics.ah1.gp" file from the simulation tools' TestSimulation, I am getting output, however that output does not actually belong to my data, the point is that there is no error in this case. And when I am using "WithResampling" function, I think some of my data is missing, because my data table is reducing to 990, from about 27000. I have attached the diagnostics files from both, my results, and "Testsimulation", in case it is needed. I would be grateful if anyone could help me with this. With regards, Hassan -- Hassan Khalvati Sharif University of Tehran

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Macport openmpi error
by Robyn Munoz 04 Sep '19

04 Sep '19

Hello, I am a new user and am trying to go through the tutorial but am confronted to a problem perfectly explained in this question: https://superuser.com/questions/1446192/macports-error-when-trying-to-selec… <https://superuser.com/questions/1446192/macports-error-when-trying-to-selec…> I don’t know if they found their solution but could somebody answer this person and so solve my problem as well. Thank you, Robyn Munoz

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No ETK call on Thu Sep 5
by Steven R. Brandt 04 Sep '19

04 Sep '19

Remember, there's no ETK call on Thursday, Sep 5. Have a great week. --Steve

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30th Texas Symposium on Relativistic Astrophysics, Portsmouth, UK
by Witek, Helvi 03 Sep '19

03 Sep '19

Dear Colleagues, (apologies if you receive the same announcement multiple times) Registration has opened for the 30th Texas Symposium on Relativistic Astrophysics, taking place in Portsmouth, UK from Sunday 15 to Friday 20 December 2019. As convener of the parallel session on Gravity/Numerical Relativity, I would like to encourage you and your colleagues to submit an abstract for this session. Deadline for abstract submissions is the 27th of September 2019. Notification of acceptance will be on the 14th of October. Registration for early-bird fees will end on 25 October 2019, and general registration will close on 22 November 2019. More information on the symposium is appended below. I hope to see you in Portsmouth in December. Best wishes, Helvi -- =========================================== Dr. Helvi Witek Royal Society University Research Fellow Theoretical Particle Physics and Cosmology. Department of Physics King's College London =========================================== ======================================== 30th Texas Symposium on Relativistic Astrophysics Sunday 15 to Friday 20 December 2019, Portsmouth, UK Registration and Call for Abstracts is now open Abstract submission deadline is 27th September 2019. Early-bird registration fee payment deadline is 25th October. Registration closes 22nd of November. See the web site http://texas2019.org/<https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Ftexas2019.…> for more details. The Texas meetings have covered topics such as black holes, gravitational waves, neutron stars, cosmic rays, dark matter and the early Universe since the first symposium, held in Dallas in 1963. Following the tradition of previous meetings, the 2019 Symposium will cover a broad range of subjects in relativistic astrophysics, including: Gravity: Test of Gravity, Modified Gravity, Quantum Gravity, Numerical Relativity Cosmology: CMB, Reionisation, Early Universe, LSS, Lensing, Supernovae, Dark Energy, Simulations Gravitational Waves: Modelling, Sources, Experiments, Pulsar timing Messengers: Cosmic Rays, Gamma Rays, X-Rays, Neutrinos Relativity At Work: Black holes, AGN, Quasars, Neutron stars, Discs, Jets & Magnetic Fields Invited Speakers Antony Lewis (University of Sussex, UK) Astrid Eichorn (University of Southern Denmark & Heidelberg University, Germany) Chris Reynolds (University of Cambridge, UK) Claudia De Rham (Imperial College London, UK) Dany Page (National Autonomous University, Mexico) Elena Gallo (University of Michigan, USA) Elena Rossi (Leiden University, Netherlands) Elisa Resconi (Technical University Munich, Germany) Elisabeth Krause (University of Arizona, USA) Giovanni Losurdo (INFN Pisa, Italy) Juan Garcia-Bellido (University of Madrid, Spain) Luciano Rezzolla (University of Frankfurt, Germany) Martin Lemoine (IAP, France) Raffaella Margutti (Northwestern University, USA) Rennan Barkana (Tel Aviv University, Israel) Takahiro Tanaka (Kyoto University, Japan) Tanja Hinderer (University of Amsterdam, Netherlands) Tom Giblin (Kenyon College Ohio, USA) Ulisses Barres de Almeida (CBPF, Brazil) We look forward to seeing you in Portsmouth this December! Marco Bruni and David Wands on behalf of the Scientific and Local Organising Committees

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Users September 2019