After the compilation I get the following list of errors:
CST error 1: -> Missing thorn ExternalLibraries/BLAS
CST error 2: -> Missing thorn ExternalLibraries/FFTW3
CST error 3: -> Missing thorn ExternalLibraries/GSL
CST error 4: -> Missing thorn ExternalLibraries/HDF5
CST error 5: -> Missing thorn ExternalLibraries/hwloc
CST error 6: -> Missing thorn ExternalLibraries/LAPACK
CST error 7: -> Missing thorn ExternalLibraries/libjpeg
CST error 8: -> Missing thorn ExternalLibraries/LORENE
CST error 9: -> Missing thorn ExternalLibraries/MPI
CST error 10: -> Missing thorn ExternalLibraries/OpenSSL
CST error 11: -> Missing thorn ExternalLibraries/PAPI
CST error 12: -> Missing thorn ExternalLibraries/pthreads
CST error 13: -> Missing thorn ExternalLibraries/zlib
CST error 14: -> Thorn 'CT_MultiLevel' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CT_MultiLevel' from it !
CST error 15: -> Thorn 'Carpet' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'Carpet' from it !
CST error 16: -> Thorn 'CarpetIOHDF5' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'CarpetIOHDF5' from it !
CST error 17: -> Thorn 'CarpetInterp' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetInterp' from it !
CST error 18: -> Thorn 'CarpetLib' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetLib' from it !
CST error 19: -> Thorn 'CarpetReduce' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetReduce' from it !
CST error 20: -> Thorn 'EOS_Omni' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'EOS_Omni' from it !
CST error 21: -> Thorn 'GiRaFFEfood' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'GiRaFFEfood' from it !
CST error 22: -> Thorn 'Hydro_RNSID' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'Hydro_RNSID' from it !
CST error 23: -> Thorn 'IOHDF5' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'IOHDF5' from it !
CST error 24: -> Thorn 'IOHDF5Util' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'IOHDF5Util' from it !
CST error 25: -> Thorn 'IOJpeg' requires the capability 'libjpeg'. Please add a thorn that provides 'libjpeg' to your ThornList or remove 'IOJpeg' from it !
CST error 26: -> Thorn 'Interpolate2' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'Interpolate2' from it !
CST error 27: -> Thorn 'LlamaWaveToy' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'LlamaWaveToy' from it !
CST error 28: -> Thorn 'Meudon_Bin_BH' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Bin_BH' from it !
CST error 29: -> Thorn 'Meudon_Bin_NS' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Bin_NS' from it !
CST error 30: -> Thorn 'Meudon_Mag_NS' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Mag_NS' from it !
CST error 31: -> Thorn 'NullNews' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'NullNews' from it !
CST error 32: -> Thorn 'QuasiLocalMeasures' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'QuasiLocalMeasures' from it !
CST error 33: -> Thorn 'SphericalHarmonicDecomp' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicDecomp' from it !
CST error 34: -> Thorn 'SphericalHarmonicDecomp' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'SphericalHarmonicDecomp' from it !
CST error 35: -> Thorn 'SphericalHarmonicRecon' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicRecon' from it !
CST error 36: -> Thorn 'SphericalHarmonicRecon' requires the capability 'FFTW3'. Please add a thorn that provides 'FFTW3' to your ThornList or remove 'SphericalHarmonicRecon' from it !
CST error 37: -> Thorn 'SphericalHarmonicRecon' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'SphericalHarmonicRecon' from it !
CST error 38: -> Thorn 'SphericalHarmonicReconGen' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicReconGen' from it !
CST error 39: -> Thorn 'SystemTopology' requires the capability 'hwloc'. Please add a thorn that provides 'hwloc' to your ThornList or remove 'SystemTopology' from it !
CST error 40: -> Thorn 'SystemTopology' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'SystemTopology' from it !
CST error 41: -> Thorn 'TGRtensor' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'TGRtensor' from it !
CST error 42: -> Thorn 'TwoPunctures' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'TwoPunctures' from it !
CST error 43: -> Thorn 'TwoPunctures_KerrProca' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'TwoPunctures_KerrProca' from it !
Hello Matia. Did you run this command to install the prerequisites?
$(sudo -l sudo) su -c 'apt-get install -y subversion gcc git numactl libgsl-dev libpapi-dev python libhwloc-dev make libopenmpi-dev libhdf5-openmpi-dev libfftw3-dev libssl-dev liblapack-dev g++ curl gfortran patch pkg-config libhdf5-dev libjpeg-turbo?-dev'
Also, what do you see when you type `which mpicc`? Thanks.
--Steve
On 8/26/2019 3:00 AM, Mattia wrote:
After the compilation I get the following list of errors:
CST error 1: -> Missing thorn ExternalLibraries/BLAS
CST error 2: -> Missing thorn ExternalLibraries/FFTW3
CST error 3: -> Missing thorn ExternalLibraries/GSL
CST error 4: -> Missing thorn ExternalLibraries/HDF5
CST error 5: -> Missing thorn ExternalLibraries/hwloc
CST error 6: -> Missing thorn ExternalLibraries/LAPACK
CST error 7: -> Missing thorn ExternalLibraries/libjpeg
CST error 8: -> Missing thorn ExternalLibraries/LORENE
CST error 9: -> Missing thorn ExternalLibraries/MPI
CST error 10: -> Missing thorn ExternalLibraries/OpenSSL
CST error 11: -> Missing thorn ExternalLibraries/PAPI
CST error 12: -> Missing thorn ExternalLibraries/pthreads
CST error 13: -> Missing thorn ExternalLibraries/zlib
CST error 14: -> Thorn 'CT_MultiLevel' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CT_MultiLevel' from it !
CST error 15: -> Thorn 'Carpet' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'Carpet' from it !
CST error 16: -> Thorn 'CarpetIOHDF5' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'CarpetIOHDF5' from it !
CST error 17: -> Thorn 'CarpetInterp' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetInterp' from it !
CST error 18: -> Thorn 'CarpetLib' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetLib' from it !
CST error 19: -> Thorn 'CarpetReduce' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetReduce' from it !
CST error 20: -> Thorn 'EOS_Omni' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'EOS_Omni' from it !
CST error 21: -> Thorn 'GiRaFFEfood' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'GiRaFFEfood' from it !
CST error 22: -> Thorn 'Hydro_RNSID' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'Hydro_RNSID' from it !
CST error 23: -> Thorn 'IOHDF5' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'IOHDF5' from it !
CST error 24: -> Thorn 'IOHDF5Util' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'IOHDF5Util' from it !
CST error 25: -> Thorn 'IOJpeg' requires the capability 'libjpeg'. Please add a thorn that provides 'libjpeg' to your ThornList or remove 'IOJpeg' from it !
CST error 26: -> Thorn 'Interpolate2' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'Interpolate2' from it !
CST error 27: -> Thorn 'LlamaWaveToy' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'LlamaWaveToy' from it !
CST error 28: -> Thorn 'Meudon_Bin_BH' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Bin_BH' from it !
CST error 29: -> Thorn 'Meudon_Bin_NS' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Bin_NS' from it !
CST error 30: -> Thorn 'Meudon_Mag_NS' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Mag_NS' from it !
CST error 31: -> Thorn 'NullNews' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'NullNews' from it !
CST error 32: -> Thorn 'QuasiLocalMeasures' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'QuasiLocalMeasures' from it !
CST error 33: -> Thorn 'SphericalHarmonicDecomp' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicDecomp' from it !
CST error 34: -> Thorn 'SphericalHarmonicDecomp' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'SphericalHarmonicDecomp' from it !
CST error 35: -> Thorn 'SphericalHarmonicRecon' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicRecon' from it !
CST error 36: -> Thorn 'SphericalHarmonicRecon' requires the capability 'FFTW3'. Please add a thorn that provides 'FFTW3' to your ThornList or remove 'SphericalHarmonicRecon' from it !
CST error 37: -> Thorn 'SphericalHarmonicRecon' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'SphericalHarmonicRecon' from it !
CST error 38: -> Thorn 'SphericalHarmonicReconGen' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicReconGen' from it !
CST error 39: -> Thorn 'SystemTopology' requires the capability 'hwloc'. Please add a thorn that provides 'hwloc' to your ThornList or remove 'SystemTopology' from it !
CST error 40: -> Thorn 'SystemTopology' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'SystemTopology' from it !
CST error 41: -> Thorn 'TGRtensor' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'TGRtensor' from it !
CST error 42: -> Thorn 'TwoPunctures' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'TwoPunctures' from it !
CST error 43: -> Thorn 'TwoPunctures_KerrProca' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'TwoPunctures_KerrProca' from it !
Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
Hello Nattia, all,
did Steve's suggestion fix the problem for you?
On 8/26/2019 3:00 AM, Mattia wrote:
After the compilation I get the following list of errors:
CST error 1: -> Missing thorn ExternalLibraries/BLAS
To me this can also be caused errors during the GetComponents. These can be caused if eg github refuses to talk the the local subversion installation (or if subversion is missing altogether in which case Steve's suggestion would work) if eg the subversion (or OpenSSL) library is too old. For a too old subversion installing a current one using the instructions eg in https://nbviewer.jupyter.org/github/nds-org/jupyter-et/blob/master/CactusTut... will help.
Best would be to provide output from GetComponents, ie run:
./GetComponents &>GetComponents.log https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2019_03/einsteintoolki...
then attach the file GetComponents.log to an email to this list.
Yours, Roland
users@lists.einsteintoolkit.org
-
Haas, Roland -
Mattia -
Steven R. Brandt