Hello Matia. Did you run this command to install the prerequisites?
$(sudo -l sudo) su -c 'apt-get install -y subversion gcc git numactl libgsl-dev libpapi-dev python libhwloc-dev make libopenmpi-dev libhdf5-openmpi-dev libfftw3-dev libssl-dev liblapack-dev g++ curl gfortran patch pkg-config libhdf5-dev libjpeg-turbo?-dev'
Also, what do you see when you type `which mpicc`? Thanks.
--Steve
On 8/26/2019 3:00 AM, Mattia wrote:
After the compilation I get the following list of errors:
CST error 1: -> Missing thorn ExternalLibraries/BLAS
CST error 2: -> Missing thorn ExternalLibraries/FFTW3
CST error 3: -> Missing thorn ExternalLibraries/GSL
CST error 4: -> Missing thorn ExternalLibraries/HDF5
CST error 5: -> Missing thorn ExternalLibraries/hwloc
CST error 6: -> Missing thorn ExternalLibraries/LAPACK
CST error 7: -> Missing thorn ExternalLibraries/libjpeg
CST error 8: -> Missing thorn ExternalLibraries/LORENE
CST error 9: -> Missing thorn ExternalLibraries/MPI
CST error 10: -> Missing thorn ExternalLibraries/OpenSSL
CST error 11: -> Missing thorn ExternalLibraries/PAPI
CST error 12: -> Missing thorn ExternalLibraries/pthreads
CST error 13: -> Missing thorn ExternalLibraries/zlib
CST error 14: -> Thorn 'CT_MultiLevel' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CT_MultiLevel' from it !
CST error 15: -> Thorn 'Carpet' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'Carpet' from it !
CST error 16: -> Thorn 'CarpetIOHDF5' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'CarpetIOHDF5' from it !
CST error 17: -> Thorn 'CarpetInterp' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetInterp' from it !
CST error 18: -> Thorn 'CarpetLib' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetLib' from it !
CST error 19: -> Thorn 'CarpetReduce' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'CarpetReduce' from it !
CST error 20: -> Thorn 'EOS_Omni' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'EOS_Omni' from it !
CST error 21: -> Thorn 'GiRaFFEfood' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'GiRaFFEfood' from it !
CST error 22: -> Thorn 'Hydro_RNSID' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'Hydro_RNSID' from it !
CST error 23: -> Thorn 'IOHDF5' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'IOHDF5' from it !
CST error 24: -> Thorn 'IOHDF5Util' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'IOHDF5Util' from it !
CST error 25: -> Thorn 'IOJpeg' requires the capability 'libjpeg'. Please add a thorn that provides 'libjpeg' to your ThornList or remove 'IOJpeg' from it !
CST error 26: -> Thorn 'Interpolate2' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'Interpolate2' from it !
CST error 27: -> Thorn 'LlamaWaveToy' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'LlamaWaveToy' from it !
CST error 28: -> Thorn 'Meudon_Bin_BH' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Bin_BH' from it !
CST error 29: -> Thorn 'Meudon_Bin_NS' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Bin_NS' from it !
CST error 30: -> Thorn 'Meudon_Mag_NS' requires the capability 'LORENE'. Please add a thorn that provides 'LORENE' to your ThornList or remove 'Meudon_Mag_NS' from it !
CST error 31: -> Thorn 'NullNews' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'NullNews' from it !
CST error 32: -> Thorn 'QuasiLocalMeasures' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'QuasiLocalMeasures' from it !
CST error 33: -> Thorn 'SphericalHarmonicDecomp' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicDecomp' from it !
CST error 34: -> Thorn 'SphericalHarmonicDecomp' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'SphericalHarmonicDecomp' from it !
CST error 35: -> Thorn 'SphericalHarmonicRecon' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicRecon' from it !
CST error 36: -> Thorn 'SphericalHarmonicRecon' requires the capability 'FFTW3'. Please add a thorn that provides 'FFTW3' to your ThornList or remove 'SphericalHarmonicRecon' from it !
CST error 37: -> Thorn 'SphericalHarmonicRecon' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'SphericalHarmonicRecon' from it !
CST error 38: -> Thorn 'SphericalHarmonicReconGen' requires the capability 'HDF5'. Please add a thorn that provides 'HDF5' to your ThornList or remove 'SphericalHarmonicReconGen' from it !
CST error 39: -> Thorn 'SystemTopology' requires the capability 'hwloc'. Please add a thorn that provides 'hwloc' to your ThornList or remove 'SystemTopology' from it !
CST error 40: -> Thorn 'SystemTopology' requires the capability 'MPI'. Please add a thorn that provides 'MPI' to your ThornList or remove 'SystemTopology' from it !
CST error 41: -> Thorn 'TGRtensor' requires the capability 'LAPACK'. Please add a thorn that provides 'LAPACK' to your ThornList or remove 'TGRtensor' from it !
CST error 42: -> Thorn 'TwoPunctures' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'TwoPunctures' from it !
CST error 43: -> Thorn 'TwoPunctures_KerrProca' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'TwoPunctures_KerrProca' from it !
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