Petr
In most cases, a simple "submit" (with the same simulation name) should suffice. --from-restart-id allows restarting from a particular restart, in case you don't want to restart from the previous restart.
Simfactory has a parameter file simfactory/etc/parfiles/recover.par. Could you try this? You would submit it on a single process, let it run for a few minutes, and then submit it again:
./bin/sim submit recover --parfile=simfactory/etc/parfiles/recover.par --walltime=0:10:0
and later
./bin/sim submit recover --parfile=simfactory/etc/parfiles/recover.par --walltime=0:10:0 This should work.
-erik
On Sat, Nov 12, 2011 at 8:57 PM, Petr Tsatsin ptsatsin@fau.edu wrote:
Hello,
I'm trying to restart my simulation on queenbee using simfactory. I tried "./sim submit --from-restart-id ..." and I got "Simulation Factory: [log] Submitting: [log] Using restart id "0002" [log] Requested recovering from restart id "0" [log] Could not find checkpoint files in restart id "0000" Aborting.'' Inside my parameter file for this simulation I set up HDF5 check pointing in following way: "IO::out_dir = $parfile IOHDF5::checkpoint = "yes" IO::checkpoint_every = 100000 IO::checkpoint_file = $parfile IO::checkpoint_dir = $parfile IO::recover="auto" IO::recover_file = $parfile IO::recover_dir = $parfile" I checked that h5 check point files are actually inside the output-0000 directory. Any suggestions how can I restart the my simulation from HDF5 checkpoint with a simfactory? Thank you. -- Petr Tsatsin Graduate Student- Department of Physics Charles E. Schmidt College of Science Florida Atlantic University (561)-297-3386 ptsatin@fau.edu, ptsatsin@gmail.com
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