Hi all,
I recently built the latest release (Hilbert) on the local cluster and I've been getting a HDF5 error. I've tried building Cactus with both the local HDF5 package on the cluster as well as letting Cactus build HDF5 from scratch. Does anyone have any insight into the error I've attached below (extract of a long chain of errors of the same form)?
I can dump the output to file or give configuration files if needed.
Thanks in advance! Geraint
----------
HDF5-DIAG: Error detected in HDF5 (1.8.14) thread 0:
#000: H5Ddeprec.c line 193 in H5Dcreate1(): unable to create dataset
major: Dataset
minor: Unable to initialize object
#001: H5Dint.c line 453 in H5D__create_named(): unable to create and link to dataset
major: Dataset
minor: Unable to initialize object
#002: H5L.c line 1638 in H5L_link_object(): unable to create new link to object
major: Links
minor: Unable to initialize object
#003: H5L.c line 1882 in H5L_create_real(): can't insert link
major: Symbol table
minor: Unable to insert object
#004: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#005: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#006: H5L.c line 1674 in H5L_link_cb(): name already exists
major: Symbol table
minor: Object already exists
WARNING level 1 from host node207.cm.cluster process 0
while executing schedule bin (none), routine (no thorn)::(no routine)
in thorn CarpetIOHDF5, file /mnt/pact/gp234/NR/Cactus/arrangements/Carpet/CarpetIOHDF5/src/Output.cc:677:
-> HDF5 call 'dataset = H5Dcreate (outfile, datasetname.str().c_str(), filedatatype, dataspace, plist)' returned error code -1
WARNING level 1 from host node207.cm.cluster process 0
while executing schedule bin (none), routine (no thorn)::(no routine)
in thorn CarpetIOHDF5, file /mnt/pact/gp234/NR/Cactus/arrangements/Carpet/CarpetIOHDF5/src/Output.cc:689:
-> HDF5 call 'H5Dwrite (dataset, memdatatype, H5S_ALL, H5S_ALL, H5P_DEFAULT, data)' returned error code -1
WARNING level 1 from host node207.cm.cluster process 0
while executing schedule bin (none), routine (no thorn)::(no routine)
in thorn CarpetIOHDF5, file /mnt/pact/gp234/NR/Cactus/arrangements/Carpet/CarpetIOHDF5/src/Output.cc:725:
-> HDF5 call 'attr = H5Acreate (dataset, "level", H5T_NATIVE_INT, dataspace, H5P_DEFAULT)' returned error code -1
WARNING level 1 from host node207.cm.cluster process 0
while executing schedule bin (none), routine (no thorn)::(no routine)
in thorn CarpetIOHDF5, file /mnt/pact/gp234/NR/Cactus/arrangements/Carpet/CarpetIOHDF5/src/Output.cc:726:
-> HDF5 call 'H5Awrite (attr, H5T_NATIVE_INT, &refinementlevel)' returned error code -1
WARNING level 1 from host node207.cm.cluster process 0