Hi Erik,
It seems to work. More files appear in the directory. And now I can find me in qstat -u ettest24
qb2:
Req'd Req'd Elap Job ID Username Queue Jobname SessID NDS TSK Memory Time S Time -------------------- -------- -------- ---------- ------ ----- --- ------ ----- - ----- 595490.qb2 ettest24 checkpt static_tov 2531 4 1 -- 08:00 R 00:10
The only thing is that now $ ./simfactory/bin/sim list-simulations returns
Error: unknown command list-simulation Aborting Simfactory.
I will wait it finishes and check if the .asc files appear. Thanks, Jose
On Wed, Jan 11, 2012 at 5:44 AM, Erik Schnetter schnetter@cct.lsu.edu wrote:
Try loni_cactus07, increasing the "06" by one.
-erik
On Wed, Jan 11, 2012 at 1:57 AM, Jose Fiestas Iquira jafiestas@lbl.gov wrote:
Hi Erik,
I checked the log.txt file. The assigned allocation was loni_cactus06. I changed it to loni_cactus01 but I don't really know what options I have. How can I check to which I have access?
The results are so far the same. Run seems not to start.
Thanks, Jose
On Tue, Jan 10, 2012 at 7:05 PM, Erik Schnetter schnetter@cct.lsu.edu wrote:
Jose
If the job is "finished", then the .asc files should be there.
No, the job id should not be -1. Once a year, the name of the allocation changes; this happened about a week ago. (Usually the allocation contains a number which is increased by one.) Maybe you are submitting using the old, now dysfunctional allocation? Can you check to which allocations you have access? You can specify a non-default allocation using the --allocation=... option when submitting.
-eri
PS: I notice that you did not reply to the mailing list. The more people know details about your problem, the faster it will be solved -- and others may also benefit from reading the solution. Would you mind replying to the mailing list again?
On Tue, Jan 10, 2012 at 9:35 PM, Jose Fiestas Iquira jafiestas@lbl.gov wrote:
Hi Erik, I renamed the static_tov directory and submited again the example. The response was different:
[ettest24@qb4 Cactus]$ ./simfactory/bin/sim submit static_tov --parfile=par/static_tov.par --procs=32 -walltime=8:0:0]
Parameter file: /home/ettest24/Cactus/par/static_tov.par Skeleton Created Job directory: "/scratch/ettest24/simulations/static_tov" No testsuite option found Executable: "/home/ettest24/Cactus/exe/cactus_sim" Option list: "/scratch/ettest24/simulations/static_tov/SIMFACTORY/cfg/OptionList" Submit script: "/scratch/ettest24/simulations/static_tov/SIMFACTORY/run/SubmitScript" Run script: "/scratch/ettest24/simulations/static_tov/SIMFACTORY/run/RunScript" Parameter file: "/scratch/ettest24/simulations/static_tov/SIMFACTORY/par/static_tov.par" Assigned restart id: 0 Executing submit command: qsub /scratch/ettest24/simulations/static_tov/output-0000/SIMFACTORY/SubmitScript
And ...
[ettest24@qb4 Cactus]$ ./simfactory/bin/sim list-simulations static_tov [ACTIVE (FINISHED), restart 0000, job id -1]
The created directories
/scratch/ettest24/simulations/static_tov/output-0000 /scratch/ettest24/simulations/static_tov/output-0000-active
are, so far, similar as before. The job id -1 disturbs me. Is it OK? Still can not find any .acs files. Should it take long?
Thanks, Jose
On Tue, Jan 10, 2012 at 6:05 PM, Erik Schnetter schnetter@cct.lsu.edu wrote:
Jose
If you made an error submitting the simulation when you submitted the first time, then simfactory will remember some of these choices, and will ignore some of your command line arguments. You will either have to delete the simulation, or create a completely new simulation by choosing a different name.
Can you replace the simulation name "static_tov" by something else? It does not have to be related to the parameter file name. This will create a new simulation.
-erik
On Tue, Jan 10, 2012 at 7:31 PM, Jose Fiestas Iquira jafiestas@lbl.gov wrote:
Dear ETK users,
I am trying to run the ETK example as in https://docs.einsteintoolkit.org/et-docs/Tutorial_for_New_Users
Since /scratch/ettest24/simulations could not be find I created it. Now, after submission of the script with:
$ ./simfactory/bin/sim submit static_tov --parfile=par/static_tov.par --procs=32 --walltime=8:0:0
it gives me, for example:
$ Assigned restart id: 3 Executing submit command: qsub /scratch/ettest24/simulations/static_tov/output 0003/SIMFACTORY/SubmitScript
(I submitted it for the 3. time)
$ ./simfactory/bin/sim list-simulations gives me:
$ static_tov [ACTIVE (FINISHED), restart 0003, job id -1]
But I can not visualize the data, if present. Because: ~/scratch/simulations/static_tov/output-0000/static_tov (as in the tutorial) does not exist.
But it exists in my user directory:
/scratch/ettest24/simulations/static_tov
only any .asc file exists. So, I can not visualize the example (if run ...)
Few questions about the tutorial:
- Do I need a create a script for the example? Or is created automatically?
- How long should it take the example? Is it possible it is still running?
- Is ssh -Y qb.loni.org a typo? should be -X
Thank you and regards, Jose
On Tue, Dec 13, 2011 at 4:45 PM, Jose Fiestas Iquira jafiestas@lbl.gov wrote: > Dear colleagues, > > I am a new ETK user and am running my first example simulation as described here > https://docs.einsteintoolkit.org/et-docs/Tutorial_for_New_Users > > I could not finish the example after: > ./simfactory/bin/sim submit static_tov --parfile=par/static_tov.par > --procs=32 --walltime=8:0:0 > > with the following error message: > Parameter file: /home/ettest24/Cactus/par/static_tov.par > Error: could not access simulation base directory > /scratch/ettest24/simulations for reading and writing > Aborting Simfactory. > > Probably my LONI account is not completely set, or need to copy some > data in /scratch/ettest24/simulations/ which does not exist? > > Would appreciate any help. > > All the best, > Jose _______________________________________________ Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
-- Erik Schnetter schnetter@cct.lsu.edu http://www.cct.lsu.edu/~eschnett/
-- Erik Schnetter schnetter@cct.lsu.edu http://www.cct.lsu.edu/~eschnett/
-- Erik Schnetter schnetter@cct.lsu.edu http://www.cct.lsu.edu/~eschnett/