Hello Delaney,
Warning: Could not update fuka. Could not stash local changes. Error message was 'error: open("codes/FUKAv1_Solvers/BBH/compile"): Permission denied fatal: Unable to process path codes/FUKAv1_Solvers/BBH/compile Cannot save the current worktree state
This is a git error that occurs if there are local changes tot the checked out fuka repository. If you did not yourseslf make changes then something corrupted the files.
From there, I'm unable to build the toolkit, resulting in errors like:
CST error in /home/dfarrell/Cactus/lib/sbin/CST (at 319) -> Missing thorn WVUThorns_Diagnostics/VolumeIntegrals_vacuum
make[1]: *** [/home/dfarrell/Cactus/lib/make/make.configuration:213: /home/dfarrell/Cactus/configs/sim/config-data/make.thornlist] Error 1 make: *** [Makefile:264: sim] Error 2
Since GetComponents failed there may well be some thorns missing.
On the tutorial server your fasted way to recover this is is likely to wipe your Cactus tree and start from scratch. Namely running:
%%bash rm -rf ~/Cactus ~/GetComponents ~/einsteintoolkit.th
in a notebook cell should remove the full Cactus tree, GetComponents and the downloaded thornlist and let you start from scratch.
Yours, Roland