Hi again list,
I've just done another install onto my 64-bit Ubuntu 14.04 machine (the 32-bit Debian one is running now), and when I submit a job I get this output:
$ ./simfactory/bin/sim show-output --follow static_tov Simulation name: static_tov ================================================================================ The job's Formaline output is: ================================================================================ (file does not exist) ================================================================================ The job's stdout is: ================================================================================ Simulation name: static_tov Running simulation static_tov Preparing: Checking: /home/ian/simulations/static_tov/output-0001-active bonsai Wed Aug 20 17:10:06 BST 2014 Environment: Starting: INFO (Cactus): Increasing logging level from 0 to 3 Wed Aug 20 17:10:07 BST 2014 Simfactory Done at date: 0
================================================================================ The job's stderr is: ================================================================================ + set -e + cd /home/ian/simulations/static_tov/output-0001-active + echo Checking: + pwd + hostname + date + echo Environment: + export GMON_OUT_PREFIX=gmon.out + GMON_OUT_PREFIX=gmon.out + export OMP_NUM_THREADS=4 + OMP_NUM_THREADS=4 + env + echo Starting: ++ date +%s + export CACTUS_STARTTIME=1408551006 + CACTUS_STARTTIME=1408551006 + mpirun -np 1 /home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim -L 3 /home/ian/simulations/static_tov/output-0001/static_tov_small.par [bonsai:02183] *** Process received signal *** [bonsai:02183] Signal: Segmentation fault (11) [bonsai:02183] Signal code: Address not mapped (1) [bonsai:02183] Failing at address: 0x44000098 [bonsai:02183] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10340) [0x7fefca300340] [bonsai:02183] [ 1] /usr/lib/libmpich.so.10(PMPI_Comm_rank+0x4b) [0x7fefc800d63b] [bonsai:02183] [ 2] /home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim(CactusDefaultMyProc+0x6f) [0xc2951f] [bonsai:02183] [ 3] /home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim(CCTKi_CommandLineFinished+0x40) [0xc16380] [bonsai:02183] [ 4] /home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim(CCTKi_ProcessCommandLine+0x204) [0xc00744] [bonsai:02183] [ 5] /home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim(CCTKi_InitialiseCactus+0x3c) [0xbfd8ec] [bonsai:02183] [ 6] /home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim(main+0x1e) [0xbf542e] [bonsai:02183] [ 7] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5) [0x7fefc6f83ec5] [bonsai:02183] [ 8] /home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim() [0xbfd62c] [bonsai:02183] *** End of error message *** -------------------------------------------------------------------------- mpirun noticed that process rank 0 with PID 2183 on node bonsai exited on signal 11 (Segmentation fault). --------------------------------------------------------------------------
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anyone else encountered or dealt with this?
Cheers,
Ian.