Hello,
I am attempting to build the CarpetHDF5 VisIt Plugin on a Mac 10.9.4 using version 2.8.0 of VisIt. I get the following error. Any ideas?
-DG
bash-3.2$ ./install Running: xmledit2.8.0 CarpetHDF5.xml Running: xml2cmake2.8.0 CarpetHDF5.xml ----------------------------------------------------------------- Parsed document of type Plugin -----------------------------------------------------------------
Plugin: CarpetHDF5 ("Carpet AMR/curvilinear HDF5 output generated by the Cactus Computational Toolkit", type=database) -- version 2.1 Attribute: ()
-- The C compiler identification is AppleClang 5.1.0.5030040 -- The CXX compiler identification is AppleClang 5.1.0.5030040 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Configuring done CMake Warning (dev): Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake --help-policy CMP0042" for policy details. Use the cmake_policy command to set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
ECarpetHDF5Database_par ECarpetHDF5Database_ser ICarpetHDF5Database MCarpetHDF5Database
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done -- Build files have been written to: /Users/garrison/Downloads/CarpetHDF5 Scanning dependencies of target ECarpetHDF5Database_par [ 6%] Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5EnginePluginInfo.C.o [ 12%] Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5PluginInfo.C.o [ 18%] Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5CommonPluginInfo.C.o [ 25%] Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/avtCarpetHDF5FileFormat.C.o [ 31%] Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/H5Index.C.o Linking CXX shared library /Users/garrison/.visit/2.8.0/darwin-x86_64/plugins/databases/libECarpetHDF5Database_par.dylib Undefined symbols for architecture x86_64: "avtFileFormat::AddMeshToMetaData(avtDatabaseMetaData*, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, avtMeshType, double const*, int, int, int, int, int const*)", referenced from: avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o "avtScalarMetaData::avtScalarMetaData(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, avtCentering)", referenced from: avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o "avtVectorMetaData::avtVectorMetaData(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, avtCentering, int)", referenced from: avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o "avtDatabaseMetaData::AddGroupInformation(int, int, std::__1::vector<int, std::__1::allocator<int> >&)", referenced from: avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o "avtDatabaseMetaData::SetTimes(std::__1::vector<double, std::__1::allocator<double> > const&)", referenced from: avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o "avtDatabaseMetaData::SetCycles(std::__1::vector<int, std::__1::allocator<int> > const&)", referenced from: avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o "avtDatabaseMetaData::GetMesh(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const", referenced from: avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[2]: *** [/Users/garrison/.visit/2.8.0/darwin-x86_64/plugins/databases/libECarpetHDF5Database_par.dylib] Error 1 make[1]: *** [CMakeFiles/ECarpetHDF5Database_par.dir/all] Error 2 make: *** [all] Error 2 bash-3.2$
-- David Garrison, Ph.D. Associate Professor and Chair of Physics University of Houston-Clear Lake Bayou 3531 Houston, TX 77058
Tel: 281-283-3796 Fax: 281-283-3709 http://sce.uhcl.edu/garrison
For more information about the UHCL Physics Program go to http://www.uhcl.edu/physics or sign up for UHCL newsletters at https://ecommunications.houston.edu/uhcl/join.html
"If we knew what it was we were doing, it would not be called research, would it?" — Albert Einstein.