Dear Comer:
I would like to confirm you that Ian and Eric were able to correctly find out the problem that originated the build problem on build using macports * The HDF5 MacPorts port was updated from 1.8.14 to 1.8.15 on 16-May-2015 (https://trac.macports.org/log/trunk/dports/science/hdf5/Portfile), 2 days before the ET release * HDF5 is undefining __attribute__, and this is creating site effect (caused by including hdf5.h) that have standard c++ include to fail. This is true for gcc4.8 and gcc5.1 * A simple solution is to change the order of includes in the include file: arrangements/Carpet/CarpetIOHDF5/src/CarpetIOHDF5.hh. you can replace this include with the one attached to the present mail. * to have a fast start you may also copy the attached file: osx-macports.run in simfactory/mdb/runscript. * then set your local machine with the command
simfactory/bin/sim setup
* edit the local machine file you created (using the previous command) in simfactory/mdb/machine to have:
*** ASSUMING MACPORT IS INSTALLED (subversion is needed cause the version that comes with XCOde *** will not work [new XCODE 6.3.2 and MacPorts 2.3.3]
sudo port install subversion sudo port install pkgconfig gcc49 fftw-3 gsl jpeg zlib hdf5 +fortran +gfortran openmpi openssl
### [FROM a MAIN DIRECTORY for the Cactus tree]
curl -kLO https://raw.githubusercontent.com/gridaphobe/CRL/ET_2015_05/GetComponents chmod a+x GetComponents ./GetComponents --parallel https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2015_05/einsteintoolki...
### [the enter in the cactus directory]
cd Cactus
cp [where_you_save_it]/CarpetIOHDF5.hh arrangements/Carpet/CarpetIOHDF5/src/ cp [where_you_save_it]/osx-macports.run simfactory/mdb/runscript simfactory/bin/sim setup
### [DO the local editing. In my case was the file named] ### the following line should be present ### ### optionlist = osx-macports.cfg ### runscript = osx-macports.run ### ppn = 4 ### max-num-threads = 4 ### num-threads = 1 ### nodes = 1 ### ### NOT: my machine is “iMac (27-inch, Late 2009)” ### OS X Yosemite 10.10.3 ### ### Processor Name: Intel Core i5 ### Processor Speed: 2,66 GHz ### Number of Processors: 1 ### Total Number of Cores: 4 ### L2 Cache (per Core): 256 KB ### L3 Cache: 8 MB ### Memory: 8 GB
simfactory/bin/sim build --thornlist thornlists/einsteintoolkit.th simfactory/bin/sim create-run static_tov --parfile=par/static_tov.par --proc=4 --num-threads=2
### Now the test TOV simulations should be running code is running on two process using two cores each.
## sudo port install python27 ## sudo port select —set python python27 ## sudo port install py-numpy py-scipy ## sudo port install py-matplotlib ## sudo port install py-h5py ## sudo port install py-ipython ## sudo port select —set ipython ipython27 ## ## ## TO SEE THE RESULTS:
ipython —-pylab
In [..]: FILE='/Users/depietri/simulations/static_tov/output-0000/static_tov/hydrobase-rho.maximum.asc' In [..]: d=loadtxt(FILE) In [..]: plot(d[:,1],d[:,2]*1e3,'k-') In [..]: ylim(1.25,1.30) In [..]: xlabel(r’time [CU c=1, G=1, $M_\odot$=1]') In [..]: ylabel(r'max($\rho \cdot 10^3$) [CU c=1, G=1, $M_\odot$=1]') In [..]:
------------------------------------------------------------------ Roberto De Pietri e-mail:roberto.depietri@fis.unipr.it Dipartimento di Fisica http://www.fis.unipr.it/~roberto.depietri Universita' di Parma tel: +39 (0521) 905280 Via G.P.Usberti 7/A fax: +39 (0521) 905223 I-43100 PARMA --- ITALY