Hello David,
I tried this on another cluster and got the results below. I didn’t use simfactory on it either.
Does this also fail to build? And if so what is the error message?
If possible please include the full output of: make fixedmhd-realclean export VERBOSE=yes make fixedmhd 2>&1 | tee make.log
Yours, Roland
-DG
On Mar 20, 2018, at 11:47 AM, Roland Haas roland.haas@physics.gatech.edu wrote:
Hello DG,
it could be that something failed while MPI was compiled. Would you mind attaching the following files from inside of your Cactus tree, please?
configs/sim/bindings/Configuration/Capabilities/make.MPI.defn
INC_DIRS += $(MPI_INC_DIRS) INC_DIRS_F += $(MPI_LIB_DIRS) MPI_BUILD = 1 MPI_INSTALL_DIR = HWLOC_DIR = CCTK_MPI = 1 MPI_DIR = /home/garrison/Cactus/configs/fixedmhd/scratch/external/MPI MPI_INC_DIRS = /home/garrison/Cactus/configs/fixedmhd/scratch/external/MPI/include MPI_LIB_DIRS = /home/garrison/Cactus/configs/fixedmhd/scratch/external/MPI/lib MPI_LIBS = mpi_usempif08 mpi_usempi_ignore_tkr mpi_mpifh mpi_cxx mpi open-rte open-pal rt util HAVE_CAPABILITY_MPI = 1
configs/sim/bindings/Configuration/Capabilities/make.HDF5.defn
include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.MPI.defn include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.ZLIB.defn INC_DIRS += $(HDF5_INC_DIRS) INC_DIRS_F += $(HDF5_INC_DIRS) HDF5_BUILD = 1 HDF5_ENABLE_CXX = no HDF5_ENABLE_FORTRAN = yes LIBSZ_DIR = LIBZ_DIR = HDF5_INSTALL_DIR = HDF5_DIR = /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5 HDF5_ENABLE_CXX = no HDF5_ENABLE_FORTRAN = yes HDF5_INC_DIRS = /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5/lib /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5/include /home/garrison/Cactus/configs/fixedmh d/scratch/external/HDF5/lib HDF5_LIB_DIRS = /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5/lib HDF5_LIBS = hdf5hl_fortran hdf5_fortran hdf5_hl hdf5 m z HAVE_CAPABILITY_HDF5 = 1
configs/sim/bindings/Configuration/Capabilities/make.HDF5.deps
include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.MPI.deps include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.ZLIB.deps
as well as
confis/sim/config-info (as well as the option list that you used)?
# CONFIGURATION : fixedmhd # CONFIG-DATE : Sun Mar 18 02:24:53 2018 (GMT) # CONFIG-HOST : singularity.cluster.internal # CONFIG-STATUS : 0 # CONFIG-OPTIONS : MPI_DIR=BUILD
If possible also the full output of:
export VERBOSE=yes simfactory/bin/sim build 2>&1 | tee make.log
or
export VERBOSE=yes make sim 2>&1 | tee make.log
(depending on whether you used simfactory or not), please?
Yours, Roland
Hello,
Every time I try to compile my code I get the following error.
COMPILING arrangements/CactusPUGHIO/IOHDF5Util/src/Startup.c /share/apps/hdf5-1.8.12/include/H5public.h(61): catastrophic error: cannot open source file "mpi.h" # include <mpi.h>
This is new as of the most recent versions of Cactus. Previous compilations of the same code on the same cluster did not result in this error. Any help is appreciated.
I used the config option: MPI_DIR = BUILD
-DG
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