On 7 Feb 2011, at 18:19, Babiuc-Hamilton, Maria wrote:
Hello,
I have errors in compiling einsteintoolkit.th on a mac: First, it did not configure HDF5 Compiling einsteintoolkit CST error 1: -> Configuration script for thorn HDF5 returned exit code 1 Error message: 'Error while building HDF5. Aborting.'
With external HDF5 directory, it complained Use external hdf5 --error libsz.dylib needed
With external HDF5_DIR and LIBSZ_DIR the error is:
Hi Maria,
I'm not sure I follow. Did you also try to get HDF5 to build as part of Cactus, before trying the external directories? If you omit the HDF5_DIR variable, and don't say HDF5=yes, then ExternalLibraries/HDF5 should attempt to build HDF5. Do you get an error when it tries to build this? If so, what is that error? Do you have an up-to-date version of ExternalLibraries/HDF5?
Preprocessing /Users/babiuc/Cactus/arrangements/Carpet/CarpetIOBasic/src/iobasic.cc Compiling /Users/babiuc/Cactus/arrangements/Carpet/CarpetIOBasic/src/iobasic.cc /Users/babiuc/Cactus/arrangements/Carpet/CarpetIOBasic/src/iobasic.cc: In function 'bool CarpetIOBasic::UseScientificNotation(const T&) [with T = int]': /Users/babiuc/Cactus/arrangements/Carpet/Carpet/src/typecase:131:1: instantiated from here /Users/babiuc/Cactus/arrangements/Carpet/CarpetIOBasic/src/iobasic.cc:701:5: internal compiler error: in tsubst_copy_and_build, at cp/pt.c:13326 Please submit a full bug report, with preprocessed source if appropriate.
As Erik said, this indicates a bug in the compiler, which you could report to the GNU team.
Erik: should we consider blacklisting this compiler for the ET until we find a workaround?
See http://gcc.gnu.org/bugs.html for instructions. make[3]: *** [iobasic.cc.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/Users/babiuc/Cactus/configs/einsteintoolkit/lib/libthorn_CarpetIOBasic.a] Error 2 make: *** [einsteintoolkit] Error 2
please help, Maria
PS: I am using the new gnu compilers: CC = gcc-mp-4.6 CXX = g++-mp-4.6 F77 = gfortran-mp-4.6 F90 = gfortran-mp-4.6 and the hdf5 is the one used by the visit2.2.0 binaries for mac x86_64: hdf5-1.8.4-x86_64 and required by CarpetHDF5.