Hi,
HDF5 in ET does not have hdf5merge.cc hdf5extract.cc, etc. Building with old CactusExternal/HDF5 might be one solution but I'd like to know a newer method, if exists.
Hee Il
Hee Il
To my knowledge, CactusExternal/HDF5 and lib/make/extras/HDF5 do not have these files either. I don't know where these files would be. If these are C++ files, then they are probably part of Carpet. I assume they are provided by a certain thorn that is not in the ET thorn list?
However, I notice that PUGH's HDF5 utilities are not built on my system, and I wonder why. These are hdf5_convert_from_carpetiohdf5.c hdf5_convert_from_ieeeio.c hdf5_convert_from_sdf.c hdf5_recombiner.c.
-erik
On Tue, Feb 1, 2011 at 5:08 AM, Hee Il Kim heeilkim@gmail.com wrote:
Hi,
HDF5 in ET does not have hdf5merge.cc hdf5extract.cc, etc. Building with old CactusExternal/HDF5 might be one solution but I'd like to know a newer method, if exists.
Hee Il
Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
Hi Erik,
I was mistaken. They are C-files. The info of the codes is as follows;
/*@@ @file hdf5_merge.c @date Thu 10 Jan 2002 @author Thomas Radke @desc This utility program takes a list of Cactus HDF5 datafiles, merges them at the group hierarchy level and dumps the resulting tree to a new HDF5 file. @enddesc @version $Id: hdf5_merge.c,v 1.3 2009/09/29 14:38:14 schnetter Exp $ @@*/
All the utility codes (hdf5_merge, hdf5_extract, & hdf5_double_to_single) could be built on ET and could do someting e.g. merging chunked data but they don't seem to match with current Carpet HDF5 format. I couldn't open the combined file with Visit.
Is there any other way of merging chunked hdf5 data? I attached the outdated HDF5 thorn.
Ciao,
Hee Il
2011/2/1 Erik Schnetter schnetter@cct.lsu.edu
Hee Il
To my knowledge, CactusExternal/HDF5 and lib/make/extras/HDF5 do not have these files either. I don't know where these files would be. If these are C++ files, then they are probably part of Carpet. I assume they are provided by a certain thorn that is not in the ET thorn list?
However, I notice that PUGH's HDF5 utilities are not built on my system, and I wonder why. These are hdf5_convert_from_carpetiohdf5.c hdf5_convert_from_ieeeio.c hdf5_convert_from_sdf.c hdf5_recombiner.c.
-erik
On Tue, Feb 1, 2011 at 5:08 AM, Hee Il Kim heeilkim@gmail.com wrote:
Hi,
HDF5 in ET does not have hdf5merge.cc hdf5extract.cc, etc. Building with
old
CactusExternal/HDF5 might be one solution but I'd like to know a newer method, if exists.
Hee Il
Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
-- Erik Schnetter schnetter@cct.lsu.edu http://www.cct.lsu.edu/~eschnett/http://www.cct.lsu.edu/%7Eeschnett/
All the utility codes (hdf5_merge, hdf5_extract, & hdf5_double_to_single) could be built on ET and could do someting e.g. merging chunked data but they don't seem to match with current Carpet HDF5 format. I couldn't open the combined file with Visit.
I made a build by locating the old util directory to ExternalLibraries/HDF5/src with very minor tweak. Not by build with the old CactusExternal/HDF5.
Hee Il
Hee Il
Thanks for the pointer. Yes, the old CactusExternal/HDF5 has these utilities, and they should move them over to the new ExternalLibraries/HDF5 thorn. This should be straightforward.
-erik
On Tue, Feb 1, 2011 at 10:50 AM, Hee Il Kim heeilkim@gmail.com wrote:
All the utility codes (hdf5_merge, hdf5_extract, & hdf5_double_to_single) could be built on ET and could do someting e.g. merging chunked data but they don't seem to match with current Carpet HDF5 format. I couldn't open the combined file with Visit.
I made a build by locating the old util directory to ExternalLibraries/HDF5/src with very minor tweak. Not by build with the old CactusExternal/HDF5.
Hee Il
users@lists.einsteintoolkit.org
-
Erik Schnetter -
Hee Il Kim