Hi all,
I have been trying to set up the Einstein Toolkit along with the GRMHD code Spritz on a recently upgraded machine 'Galileo100 https://wiki.u-gov.it/confluence/display/SCAIUS/GALILEO100+short+guide' at CINECA, Bologna, Italy.
When I try to compile with simfactory, I get the following error message:
[jkalinan@login02 Cactus]$ ./simfactory/bin/sim build Spritz --machine=g100 --thornlist=./thornlists/einsteintoolkit_newSpritzBNS.th
Using configuration: Spritz
Reconfiguring Spritz
Writing configuration to: /g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/configs/Spritz/OptionList
/bin/bash: -c: line 0: syntax error near unexpected token `;'
/bin/bash: -c: line 0: `{ ; } && { cd /g100/home/userexternal/jkalinan/ET/Lorentz/Cactus && echo yes | { make -j4 Spritz-config options=/g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/configs/Spritz/OptionList; } 2>&1; }'
Unfortunately, I am not familiar with this type of error, and any insights on how to understand and/or fix this error and compile correctly with simfactory would be much appreciated. Kindly let me know. The python version loaded on the machine is 3.8.6.
However, I am able to compile without any problems using make via the following commands:
make Spritz-config options=/g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/simfactory/mdb/optionlists/g100.cfg thornlist=./thornlists/einsteintoolkit_newSpritzBNS.th make Spritz
Thank you very much. Cheers, Jay Kalinani
Jay
This error is caused by an empty shell command. One of the settings in your MDB file for Galileo100 is an empty string. Unfortunately, the empty string is not a proper shell command. My guess is that either removing that line (which would then use the default), or changing the setting to ":" (the colon character) would work. The colon character is a do-nothing shell command.
-erik
On Mon, Sep 6, 2021 at 4:36 AM Jay Vijay Kalinani jayvijay.kalinani@phd.unipd.it wrote:
Hi all,
I have been trying to set up the Einstein Toolkit along with the GRMHD code Spritz on a recently upgraded machine 'Galileo100' at CINECA, Bologna, Italy.
When I try to compile with simfactory, I get the following error message:
[jkalinan@login02 Cactus]$ ./simfactory/bin/sim build Spritz --machine=g100 --thornlist=./thornlists/einsteintoolkit_newSpritzBNS.th
Using configuration: Spritz
Reconfiguring Spritz
Writing configuration to: /g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/configs/Spritz/OptionList
/bin/bash: -c: line 0: syntax error near unexpected token `;'
/bin/bash: -c: line 0: `{ ; } && { cd /g100/home/userexternal/jkalinan/ET/Lorentz/Cactus && echo yes | { make -j4 Spritz-config options=/g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/configs/Spritz/OptionList; } 2>&1; }'
Unfortunately, I am not familiar with this type of error, and any insights on how to understand and/or fix this error and compile correctly with simfactory would be much appreciated. Kindly let me know. The python version loaded on the machine is 3.8.6.
However, I am able to compile without any problems using make via the following commands:
make Spritz-config options=/g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/simfactory/mdb/optionlists/g100.cfg thornlist=./thornlists/einsteintoolkit_newSpritzBNS.th make Spritz
Thank you very much. Cheers, Jay Kalinani
Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
Hi Erik,
Thank you very much for your suggestion. I indeed had an empty string as one of the settings in the .ini file. Modifying it fixed the issue, and now I am able to compile with simfactory.
Thank you very much again! Cheers, Jay
On Mon, 6 Sept 2021 at 16:57, Erik Schnetter schnetter@cct.lsu.edu wrote:
Jay
This error is caused by an empty shell command. One of the settings in your MDB file for Galileo100 is an empty string. Unfortunately, the empty string is not a proper shell command. My guess is that either removing that line (which would then use the default), or changing the setting to ":" (the colon character) would work. The colon character is a do-nothing shell command.
-erik
On Mon, Sep 6, 2021 at 4:36 AM Jay Vijay Kalinani jayvijay.kalinani@phd.unipd.it wrote:
Hi all,
I have been trying to set up the Einstein Toolkit along with the GRMHD code Spritz on a recently upgraded machine 'Galileo100' at CINECA, Bologna, Italy.
When I try to compile with simfactory, I get the following error message:
[jkalinan@login02 Cactus]$ ./simfactory/bin/sim build Spritz --machine=g100 --thornlist=./thornlists/einsteintoolkit_newSpritzBNS.th
Using configuration: Spritz
Reconfiguring Spritz
Writing configuration to: /g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/configs/Spritz/OptionList
/bin/bash: -c: line 0: syntax error near unexpected token `;'
/bin/bash: -c: line 0: `{ ; } && { cd /g100/home/userexternal/jkalinan/ET/Lorentz/Cactus && echo yes | { make -j4 Spritz-config options=/g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/configs/Spritz/OptionList; } 2>&1; }'
Unfortunately, I am not familiar with this type of error, and any insights on how to understand and/or fix this error and compile correctly with simfactory would be much appreciated. Kindly let me know. The python version loaded on the machine is 3.8.6.
However, I am able to compile without any problems using make via the following commands:
make Spritz-config options=/g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/simfactory/mdb/optionlists/g100.cfg thornlist=./thornlists/einsteintoolkit_newSpritzBNS.th make Spritz
Thank you very much. Cheers, Jay Kalinani
Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
-- Erik Schnetter schnetter@cct.lsu.edu http://www.perimeterinstitute.ca/personal/eschnetter/
Hello Jay,
great to hear that this could be solved.
Yours, Roland
Hi Erik,
Thank you very much for your suggestion. I indeed had an empty string as one of the settings in the .ini file. Modifying it fixed the issue, and now I am able to compile with simfactory.
Thank you very much again! Cheers, Jay
On Mon, 6 Sept 2021 at 16:57, Erik Schnetter schnetter@cct.lsu.edu wrote:
Jay
This error is caused by an empty shell command. One of the settings in your MDB file for Galileo100 is an empty string. Unfortunately, the empty string is not a proper shell command. My guess is that either removing that line (which would then use the default), or changing the setting to ":" (the colon character) would work. The colon character is a do-nothing shell command.
-erik
On Mon, Sep 6, 2021 at 4:36 AM Jay Vijay Kalinani jayvijay.kalinani@phd.unipd.it wrote:
Hi all,
I have been trying to set up the Einstein Toolkit along with the GRMHD code Spritz on a recently upgraded machine 'Galileo100' at CINECA, Bologna, Italy.
When I try to compile with simfactory, I get the following error message:
[jkalinan@login02 Cactus]$ ./simfactory/bin/sim build Spritz --machine=g100 --thornlist=./thornlists/einsteintoolkit_newSpritzBNS.th
Using configuration: Spritz
Reconfiguring Spritz
Writing configuration to: /g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/configs/Spritz/OptionList
/bin/bash: -c: line 0: syntax error near unexpected token `;'
/bin/bash: -c: line 0: `{ ; } && { cd /g100/home/userexternal/jkalinan/ET/Lorentz/Cactus && echo yes | { make -j4 Spritz-config options=/g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/configs/Spritz/OptionList; } 2>&1; }'
Unfortunately, I am not familiar with this type of error, and any insights on how to understand and/or fix this error and compile correctly with simfactory would be much appreciated. Kindly let me know. The python version loaded on the machine is 3.8.6.
However, I am able to compile without any problems using make via the following commands:
make Spritz-config options=/g100/home/userexternal/jkalinan/ET/Lorentz/Cactus/simfactory/mdb/optionlists/g100.cfg thornlist=./thornlists/einsteintoolkit_newSpritzBNS.th make Spritz
Thank you very much. Cheers, Jay Kalinani
Users mailing list Users@einsteintoolkit.org https://urldefense.com/v3/__http://lists.einsteintoolkit.org/mailman/listinf...
-- Erik Schnetter schnetter@cct.lsu.edu https://urldefense.com/v3/__http://www.perimeterinstitute.ca/personal/eschne...
Users mailing list Users@einsteintoolkit.org https://urldefense.com/v3/__http://lists.einsteintoolkit.org/mailman/listinf...
users@lists.einsteintoolkit.org
-
Erik Schnetter -
Jay Vijay Kalinani -
Roland Haas