Dear Sir/Madam,
I am a new user of kuibit and I would like to report a bug (at least that is how it appears to me) and a possible solution to it.
I am running Ubuntu through the Windows subsystem for Linux (Windows 10) and when trying to run a kuibit script to plot some data from the single star simulation tov_EV ( https://github.com/EinsteinToolkit/jupyter-et/blob/master/tutorial-server/no...), the following error is shown:
File "/home/USER/.local/lib/python3.10/site-packages/tikzplotlib/_axes.py", line 3, in <module> from matplotlib.backends.backend_pgf import ( ImportError: cannot import name 'common_texification' from 'matplotlib.backends.backend_pgf'
Apparently the function "common_texification" has been discontinued and replaced by "_tex_escape" (as shown in matplotlib.backends.backend_pgf in the Spyder files - the Python compiler I use in Windows).
@_api.deprecated("3.6") def common_texification(text): return _tex_escape(text)
So, by replacing the instances of "common_texification" (6 I believe) by "_tex_escape" in the _axes.py module of the tikzplotlib library, the kuibit functions in Ubuntu seem to run smoothly.
I am a relatively inexperienced user of Ubuntu/WSL/Python and I am not sure how much this is considered a bug, but I hope that this could be useful for others.
Many thanks, Rodrigo
Hi Rodrigo,
I believe you are experiencing the same issue reported here: https://github.com/Sbozzolo/kuibit/issues/37
A possible workaround is to use kuibit in an environment with matplotlib 3.7.
Best, Thiago
On Mon, May 6, 2024 at 10:12 AM Rodrigo Berté berte.rodrigo@gmail.com wrote:
Dear Sir/Madam,
I am a new user of kuibit and I would like to report a bug (at least that is how it appears to me) and a possible solution to it.
I am running Ubuntu through the Windows subsystem for Linux (Windows 10) and when trying to run a kuibit script to plot some data from the single star simulation tov_EV ( https://github.com/EinsteinToolkit/jupyter-et/blob/master/tutorial-server/no...), the following error is shown:
File "/home/USER/.local/lib/python3.10/site-packages/tikzplotlib/_axes.py", line 3, in <module> from matplotlib.backends.backend_pgf import ( ImportError: cannot import name 'common_texification' from 'matplotlib.backends.backend_pgf'
Apparently the function "common_texification" has been discontinued and replaced by "_tex_escape" (as shown in matplotlib.backends.backend_pgf in the Spyder files - the Python compiler I use in Windows).
@_api.deprecated("3.6") def common_texification(text): return _tex_escape(text)
So, by replacing the instances of "common_texification" (6 I believe) by "_tex_escape" in the _axes.py module of the tikzplotlib library, the kuibit functions in Ubuntu seem to run smoothly.
I am a relatively inexperienced user of Ubuntu/WSL/Python and I am not sure how much this is considered a bug, but I hope that this could be useful for others.
Many thanks, Rodrigo
--
Dr. Rodrigo Berté
Goiânia-GO, Brazil _______________________________________________ Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
Hi Rodrigo,
Thanks for your bug report, for looking into it, and trying to come up with a potential solution.
As Thiago mentioned, this is a known issue. In version 1.4.1 (tagged but not released), the import of the offending module (`tikzplotlitb`) only occurs when the module is needed. If you want to give it a try, you can install this version of kuibit with: ``` pip install -U git+https://github.com/sbozzolo/kuibit.git@141 ```
There is a pull request to `tikzplotlib` that does what you suggested: https://github.com/nschloe/tikzplotlib/pull/604 . However, it has not been merged yet. Unfortunately, `tikzplotlib` hasn't seen too much work as of lately...
Please, let us know if you encounter further issues.
Best, Gabriele
On Mon, May 6, 2024 at 7:39 AM Thiago Assumpção assumpcaothiago@gmail.com wrote:
Hi Rodrigo,
I believe you are experiencing the same issue reported here: https://github.com/Sbozzolo/kuibit/issues/37
A possible workaround is to use kuibit in an environment with matplotlib 3.7.
Best, Thiago
On Mon, May 6, 2024 at 10:12 AM Rodrigo Berté berte.rodrigo@gmail.com wrote:
Dear Sir/Madam,
I am a new user of kuibit and I would like to report a bug (at least that is how it appears to me) and a possible solution to it.
I am running Ubuntu through the Windows subsystem for Linux (Windows 10) and when trying to run a kuibit script to plot some data from the single star simulation tov_EV ( https://github.com/EinsteinToolkit/jupyter-et/blob/master/tutorial-server/no...), the following error is shown:
File "/home/USER/.local/lib/python3.10/site-packages/tikzplotlib/_axes.py", line 3, in <module> from matplotlib.backends.backend_pgf import ( ImportError: cannot import name 'common_texification' from 'matplotlib.backends.backend_pgf'
Apparently the function "common_texification" has been discontinued and replaced by "_tex_escape" (as shown in matplotlib.backends.backend_pgf in the Spyder files - the Python compiler I use in Windows).
@_api.deprecated("3.6") def common_texification(text): return _tex_escape(text)
So, by replacing the instances of "common_texification" (6 I believe) by "_tex_escape" in the _axes.py module of the tikzplotlib library, the kuibit functions in Ubuntu seem to run smoothly.
I am a relatively inexperienced user of Ubuntu/WSL/Python and I am not sure how much this is considered a bug, but I hope that this could be useful for others.
Many thanks, Rodrigo
--
Dr. Rodrigo Berté
Goiânia-GO, Brazil _______________________________________________ Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
users@lists.einsteintoolkit.org
-
Gabriele Bozzola -
Rodrigo Berté -
Thiago Assumpção