Users

users@lists.einsteintoolkit.org

3 participants
3984 discussions

Meeting Minutes 2021-12-16
by Gabella, William E 16 Dec '21

16 Dec '21

Present: Steve B, Bill G, Roland H, Peter D, Yosef Z, Miguel G, Atul K, Zach E Chair: Steve B, Minutes: Bill G * Last Release (named Johnson, dated Dec 2021), comments Steve, it is done and it was more work than previously thought. Did update the process notes. Yosef, for the announcement upload to Hyperspace in our release notes was a reference to another announcement but could not resolve it. This announcement is currently on Hyperspace at https://hyperspace.uni-frankfurt.de/2021/12/09/new-einstein-toolkit-release… . The contact is not listed correctly, says Yosef and not maintainers. We found the previous release on Hyperspace at https://hyperspace.uni-frankfurt.de/2021/05/31/the-twenty-second-release-of… . Seems to be Wordpress as the host. The other announcement was too long, so Roland asked that Yosef decrease it. Steve, maybe one can also put in the DOI, but Luciano Rezzola (runs the site) does not want links (maybe?). Zenodo reference is https://doi.org/10.5281/zenodo.5770803 . Steve, would like to have Kranc and NRpy build and for this release and they did not. Zach, working on updating and modernizing Baikal, next release will be more consistent and seamless. Improvements to the build system, more in line with NRPy ( http://astro.phys.wvu.edu/bhathome/ ). More code re-use with the NRPy infrastructure, and automatic generation of Par files. That is what is planned. Also will check that you can run the NRPy notebook and create the generated code---Zach is working on it. ** The tutorial server Steve, it has been updated and runs the Cactus tutorial, heat equation, and wave equation notebooks without incident, also the Self Force tutorial. Should be able to get at it in docker, the Docker hub is Einstein Toolkit. And Steve has access to it and can give other people access to the Jupyter ET repo and into the directory and build the images there. He would like to add some documentation---you need to build base, notebook, cilogin (makes the system we have), and CYOL, (create your own login for the tutorial servers). Each uses a "From" the previous step and one can push to the repo and it should all go. Need permissions to push it there. Could make a script on the tutorial server, so that when a new version appears it could install it automatically....otherwise one must deal with LSU's CCT IT system. You can create your own server based on CILogin step. * SPEC Benchmark Need to ping them about the status of ET. Have answered all their email. SPEC at https://www.spec.org/ , last posted results are from 2017. * ET Website Glitch Roland, found a glitch on the ET Website. If you go to the BNS gallery page with http and not https, you can see the movie frame and the play triangle, but it will not play. Need to check out server logs. https://einsteintoolkit.org/gallery/bns/index.html Shows the movie. http://einsteintoolkit.org/gallery/bns/index.html Shows only the movie frame. * Bug Hunt / Hack-a-thon Bill, sometime in early January will post about having a "hack-a-thon" / "bug hunt" to clear as many Open Tickets as possible. Focus of this one would be clear tickets. * 2017 ET Summer school and workshop Some of us were interviewed by a graduate student about using code, and he published his paper, https://arxiv.org/abs/2109.10971 . Roland would like to ask him to talk about it to us. * AOB Peter, talked to Barry Wardell and he will try to have a European ET Workshop in UCD, Dublin, looking for funding. Steve, Supercomputing 2021 ( https://sc21.supercomputing.org/ ) was great. Best Tech Party ever. Was in the St. Louis City Museum that is kind of a fun house, bizarre artwork inside a building, with lots of tunnels and slides weaving through the building, 10 story slide on the outside. Steve, we talked about a regular monthly talk at our telecons. Reminds us that we want to do that. Atul, announcement that he started at RIT...finishing Notre Dame PhD and continuing as an RIT post-doc. He thanks the ET community for all the help and support. * [https://www.einsteintoolkit.org/tools/unanswered.php unanswered question on mailing list] * [https://bitbucket.org/einsteintoolkit/tickets/issues?status=open&status=new… open tickets sorted by update time] Gallery examples should get closed...and then are re-opened for the next release. If it is your ticket, click the Resolve button (upper right) and give it some text. * [https://bitbucket.org/einsteintoolkit/tickets/issues?status=new&status=open… tickets ready for review] The Chair and Minute taker for the next meeting, Jan 6th, chair Yosef, and minutes Roland. ************************************************************************************* *** *** *** Have a great break, Merry Christmas, Happy Holidays, and a great New Year! *** *** *** ************************************************************************************* -- ===================================== William Gabella Research Assistant Professor Department of Physics and Astronomy Vanderbilt University Nashville, TN USA b.gabella(a)vanderbilt.edu (o) 615-343-2713

1 0

GRHydro_c2p_failure_problem
by 白济民 16 Dec '21

16 Dec '21

Hi, I've successfully run the gallery BNS simulation and as a second step, I try to replace the single polytropic EoS with the 7-segment SLyPP one mentioned in the 2021_ETK_Workshop. Mainly I made two substitutions in the original par file, I changed the Thorn EOS_Omni parameters into the hybrid form and I changed the type of the GRHydro_eos_table into "Hybrid". However, the simulation aborted due to the GRHydro_c2p_failure, as can be seen in the output .err file: ---------------------------------------------------------------------- while executing schedule bin CCTK_POSTSTEP, routine GRHydro::check_GRHydro_C2P_failed in thorn GRHydro, file GRHydro_Con2Prim.F90:1787: -> xyz location: 14.06250 -5.625000 1.125000 ---------------------------------------------------------------------- I noticed that the failure point is near the outer layer of the neutron star. For clearance, I uploaded my par file and the err file. I wonder how to address this issue and I'm looking forward to your help. Yours, Jimmy

2 1

Einstein Toolkit Meeting Reminder
by users＠einsteintoolkit.org 15 Dec '21

15 Dec '21

Hello, Please consider joining the weekly Einstein Toolkit phone call at 9:00 am US central time on Thursdays. For details on how to connect and what agenda items are to be discussed, use the link below. https://docs.einsteintoolkit.org/et-docs/Main_Page#Weekly_Users_Call --The Maintainers

1 0

Agenda for Thursday's Meeting
by users＠einsteintoolkit.org 13 Dec '21

13 Dec '21

Please update the Wiki with agenda items for Thursday's meeting. Thanks! https://docs.einsteintoolkit.org/et-docs/meeting_agenda --The Maintainers

1 0

New Einstein Toolkit Release (Johnson)
by Steven R. Brandt 09 Dec '21

09 Dec '21

Release Announcement Click here to read the announcement in HTML (with hyperlinks): https://einsteintoolkit.org/about/releases/ET_2021_11_announcement.html We are pleased to announce the twenty-third release (code name "Katherine Johnson") of the Einstein Toolkit, an open-source, community developed software infrastructure for relativistic astrophysics. The highlights of this release include: * The inclusion of a new code in the Toolkit release, Kuibit * The inclusion of a new code in the Toolkit release, RePrimAnd In addition, bug fixes accumulated since the previous release in May 2021 have been included. The Einstein Toolkit is a collection of software components and tools for simulating and analyzing general relativistic astrophysical systems that builds on numerous software efforts in the numerical relativity community including code to compute initial data parameters, the spacetime evolution codes Baikal, lean_public, and McLachlan, analysis codes to compute horizon characteristics and gravitational waves, the Carpet AMR infrastructure, and the relativistic magneto-hydrodynamics codes GRHydro and IllinoisGRMHD. The Einstein Toolkit also contains a 1D self-force code. For parts of the toolkit, the Cactus Framework is used as the underlying computational infrastructure providing large-scale parallelization, general computational components, and a model for collaborative, portable code development. The Einstein Toolkit uses a distributed software model and its different modules are developed, distributed, and supported either by the core team of Einstein Toolkit Maintainers, or by individual groups. Where modules are provided by external groups, the Einstein Toolkit Maintainers provide quality control for modules for inclusion in the toolkit and help coordinate support. The Einstein Toolkit Maintainers currently involve staff and faculty from five different institutions, and host weekly meetings that are open for anyone to join. Guiding principles for the design and implementation of the toolkit include: open, community-driven software development; well thought-out and stable interfaces; separation of physics software from computational science infrastructure; provision of complete working production code; training and education for a new generation of researchers. For more information about using or contributing to the Einstein Toolkit, or to join the Einstein Toolkit Consortium, please visit our web pages at http://einsteintoolkit.org, or contact the users mailing list users(a)einsteintoolkit.org. The Einstein Toolkit is primarily supported by NSF 2004157/2004044/2004311/2004879/2003893 (Enabling fundamental research in the era of multi-messenger astrophysics). The Einstein Toolkit contains about 327 regression test cases. On a large portion of the tested machines, almost all of these tests pass, using both MPI and OpenMP parallelization. Contributors This release includes contributions by * Abhishek V. Joshi * Erik Schnetter * Gabriele Bozzola * Leonardo Werneck * Miguel Zilhao * Roland Haas * Steven R. Brandt * Zachariah Etienne How to upgrade from Lorentz Release (ET_2021_05) To upgrade from the previous release, use GetComponents with the new thornlist to check out the new version. See the Download page (http://einsteintoolkit.org/download.html) on the Einstein Toolkit website for download instructions. The SelfForce-1D code uses a single git repository, thus using git pull; git checkout ET_2021_11 will update the code. To install Kuibit, do the following: pip install --user -U kuibit==1.3.3 Machine notes Supported (tested) machines include: * Default Debian, Ubuntu, Fedora, CentOS 7, Mint, OpenSUSE and MacOS Catalina (MacPorts) installations * Bluewaters * Cori * Expanse * Frontera * Queen Bee 2 * Queen Bee 3 * Stampede 2 * Sunrise * SuperMUC-NG * Summit * Wheeler Note for individual machines: * TACC machines: defs.local.ini needs to have `sourcebasedir = $WORK` and `basedir = $SCRATCH/simulations` configured for this machine. You need to determine $WORK and $SCRATCH by logging in to the machine. * SuperMUC-NG: defs.local.ini needs to have `sourcebasedir = $HOME` and `basedir = $SCRATCH/simulations` configured for this machine. You need to determine $HOME and $SCRATCH by logging in to the machine. All repositories participating in this release carry a branch ET_2021_05 marking this release. These release branches will be updated if severe errors are found. The "Katherine Johnson" Release Team on behalf of the Einstein Toolkit Consortium (2021-11-31) * Steven R. Brandt, * Roland Haas, * Yosef Zlochower, * Cheng-Hsin Cheng, * Peter Diener, * Alexandru Dima, * William E. Gabella, * Miguel Gracia-Linares, * Gabriele Bozzola Nov, 2021

1 0

meeting minutes for 2021-12-09
by Roland Haas 09 Dec '21

09 Dec '21

Present: Roland, Steve, Yosef, Leo, Gabriele B, Peter D, Bill G * ET release ** in the process of finally updating repositories ** TODO: move simfactory website repo to git ** TODO: fix https://www.simfactory.org ** all gallery examples are updated, BBH one may see some more changes as the instructions are updated ** code generation for NRPy+ and Kranc thorns should be done earlier (month early), Steve updated timeline ** TODO: Roland to try to build, Steve to try to build using fix in https://github.com/ianhinder/Kranc/issues/151 ** TODO: add Baikal generation to GitHub testing ** Roland mentioned that GitHub action has very generous times for academic users, has been running ET CI in GitHubi in parallel since summer * BB@Home: ** Zach worked to get analysis to work with Cactus as library ** some more work to free memory after analysis, since BB@Home is memory constrained ET website: * link to kuibit or more modern code in visualization section on "Download" page of ET * TODO: Gabriele to draft visualization page for ET website: ** kuibit ** VisIt ** no longer linked to to Cactus viz page * could list to postprocessing and visualization wiki page as well: https://docs.einsteintoolkit.org/et-docs/Analysis_and_post-processing open questions in mailing list: * Roland will point http://lists.einsteintoolkit.org/pipermail/users/2021-November/008312.html to ticket in trac * Roland will respond to http://lists.einsteintoolkit.org/pipermail/users/2021-November/008314.html Dec 16: * chair: Steve * minutes: Bill G Jan 6th: * chair: Yosef * minutes: Roland No meetings until Jan 6th 2022. Yours, Roland -- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .

1 0

Kranc and MPI
by Nick Olsen 09 Dec '21

09 Dec '21

Hello all After trying to install kranc unsuccessfully, I tried a few things and eventually got an installation success message, but now when I go to build the Einstein Toolkit with the new thorns I get hit with an error about being "undefined reference MPI::Comm:Comm" in a few places in whichever thorn the ET is currently on while compiling, with removing a problematic thorn from the thornlist just postponing the error. From what I can find from some digging and looking, it seems to be a linking issue but I am lost after that. Thanks, Nicholas Olsen

2 1

Einstein Toolkit Meeting Reminder
by users＠einsteintoolkit.org 08 Dec '21

08 Dec '21

1 0

Agenda for Thursday's Meeting
by users＠einsteintoolkit.org 06 Dec '21

06 Dec '21

Please update the Wiki with agenda items for Thursday's meeting. Thanks! https://docs.einsteintoolkit.org/et-docs/meeting_agenda --The Maintainers

1 0

Meeting Minutes 2021-12-02
by Gabella, William E 02 Dec '21

02 Dec '21

Present: Bill G, Roland H, Atul K, Ratan D, Miguel G, Steven B, Leo RW, Yosef Z, Gabriele B, Yosef Z, Zach E Chair: Yosef, Minutes: Bill * Next ET Release https://docs.einsteintoolkit.org/et-docs/Release_Details Scheduled for next week. ** Gallery Examples BBH, Cheng-Hsin is doing it and said he would make the plots a few days ago and create a pull request. https://bitbucket.org/einsteintoolkit/tickets/issues/2172/test-binary-black… Scalar Multipatch, Bill is unable to run on his local cluster successfully, worked 10 days ago, but on his laptop fine. Steve ran a set of testsuites after Bill shared these problems and the ET seems fine---likely a local environment/cluster issue. https://bitbucket.org/einsteintoolkit/tickets/issues/2174/test-multi-patch-… Poisson, Miguel G, updated the website last week and went fine. https://bitbucket.org/einsteintoolkit/tickets/issues/2173/test-poisson-equa… TOV star, Peter D, ran it and it worked fine. Produced the plot with Kuibit and in the process of updating the website. Some link issues on his side slowing down the website update. https://bitbucket.org/einsteintoolkit/tickets/issues/2175/test-single-stabl… BNS, Alexandru, done and uploaded already. https://bitbucket.org/einsteintoolkit/tickets/issues/2176/test-binary-neutr… ** Release announcement in markdown format in the repository---people need to look it over. There is the list of contributors and release team, especially look at those. Sandbox Zenodo draft there and that should get looked over too. See https://sandbox.zenodo.org/record/971828#.YaZKVdDMJcE . ** Updating the repo and see that you need to regenerate Baikal, etc. Baikal looks broken when the update was tried. Zach, will take a look, seems to be a missing function. Kranc generated thorns. Tried Maclachlan and script failed to run, but machine had an old version of Mathematica 10. Roland, where were issues with using Math 12, missing function. Maybe Mathematica 11 is necessary. Need someone to use a Mathematica 11 installation. Roland, think it build last time with version 12 and the hack he had figured out. See issue on Kranc at https://github.com/ianhinder/Kranc/issues/151 . ** Will modify the release schedule, to move up the generation of Baikal and the Kranc thorns...will backdate those so the next folks do them earlier. ** Remind Roland to get in the remaining testsuites. ** Details of the release will be next week. Had already postponed to Dec 8th. * Unanswered questions [https://www.einsteintoolkit.org/tools/unanswered.php unanswered question on mailing list] Roland, Con2prim is tricky, no easy answer. Kranc question should go to Ian Hinder, he keeps his own tickets. Roland thinks he replied to it, maybe not to the list. https://bitbucket.org/einsteintoolkit/tickets/issues/2578/kranc-cactus-and-… * Open Tickets [https://bitbucket.org/einsteintoolkit/tickets/issues?status=open&status=new… open tickets sorted by update time] * Ready for Review Tickets [https://bitbucket.org/einsteintoolkit/tickets/issues?status=new&status=open… tickets ready for review] Nearly all discussed in previous meetings. Do we need reviewers for these...there is always a need for reviewers. Click on the ticket in this list to check. * Chair and Minute taker Week of Dec 9, Chair Peter D, Minutes Miguel G. * AOB None -- ===================================== William Gabella Research Assistant Professor Department of Physics and Astronomy Vanderbilt University Nashville, TN USA b.gabella(a)vanderbilt.edu (o) 615-343-2713

1 0

Jump to page:

2026

2025

2024

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

2013

2012

2011

2010

Users