Dear Colleagues, I am trying to install ETK in hopper, at NERSC. I started from scratch following the steps of the advanced tutorial. I am building a package, which includes an N-body code and Cactus, so I my aim is to be able to run Cactus in different machines. My last attempt showed me following issue: After doing simfactory/bin/sim setup in hopper, I tried
simfactory/bin/sim build
with the result
Using configuration: sim Reconfiguring sim Writing configuration to: /global/u1/f/fiestas/CACTUS-save/Cactus/configs/sim/OptionList /bin/bash: module: command not found
I am using the last development version here http://einsteintoolkit.org/download/ (also tried the last release with the same results)
I found in simfactory/mdb/machines/hopper.ini a list of module commands which apparently can not be executed. I run it in queenbee without problems. Would appreciate any help.
Regards, Jose
On Sat, Feb 25, 2012 at 11:51 AM, Jose Fiestas Iquira jafiestas@lbl.govwrote:
Hi Erik,
Yes, should be loaded automatically. Find strange they don't. I use ./simfactory/bin/sim build from the Cactus directory (I tried adding --thornlist=manifest/einsteintoolkit.th) but I keep getting Using configuration: sim Reconfiguring sim Writing configuration to: /global/u1/f/fiestas/CACTUS/Cactus/configs/sim/OptionList /bin/bash: module: command not found
I tried deleting the module commands in simfactory/mdb/machines/hopper.ini and doing them by hand. I got more output (attached) but an error anyway.
This tries are from scratch, I loaded ETK from http://einsteintoolkit.org/download/ the development version, as you tried.
It seems to me the problem is related to the configuration of my account. But I did not change the defaults.
Best, Jose
On Sat, Feb 25, 2012 at 6:16 AM, Erik Schnetter schnetter@cct.lsu.eduwrote:
Jose
The modules that are loaded automatically should not matter; Simfactory should do the right thing anyway.
What command do you use to compile? I use
./bin/sim build --thornlist=manifest/einsteintoolkit.th
-erik
On Fri, Feb 24, 2012 at 6:36 PM, Jose Fiestas Iquira jafiestas@lbl.gov wrote:
Sorri pgi compilers, not pig :)
On Fri, Feb 24, 2012 at 3:35 PM, Jose Fiestas Iquira <jafiestas@lbl.gov
wrote:
You have loaded the pig compilers. I tried both pig and intel without success. It is something related to the configuration. I get: Internal error - couldn't enter '/global/u1/f/fiestas/CACTUS/Cactus/configs/sim/config-data'
Cheers, Jose
On Fri, Feb 24, 2012 at 3:30 PM, Erik Schnetter <schnetter@cct.lsu.edu
wrote:
$ module list Currently Loaded Modulefiles:
- modules/3.2.6.6
- xtpe-network-gemini
- pgi/11.9.0
- xt-libsci/11.0.03
- udreg/2.3.1-1.0400.3911.5.13.gem
- ugni/2.3-1.0400.4127.5.20.gem
- pmi/3.0.0-1.0000.8661.28.2807.gem
- dmapp/3.2.1-1.0400.3965.10.63.gem
- gni-headers/2.1-1.0400.4156.6.1.gem
- xpmem/0.1-2.0400.30792.5.6.gem
- xe-sysroot/4.0.36
- xt-asyncpe/5.04
- atp/1.3.0
- PrgEnv-pgi/4.0.36
- eswrap/1.0.10
- xtpe-mc12
- xt-shmem/5.4.0
- xt-mpich2/5.4.0
- torque/2.5.9
- moab/6.1.4
-erik
On Fri, Feb 24, 2012 at 4:31 PM, Jose Fiestas Iquira <
jafiestas@lbl.gov>
wrote:
Erik, I suspect the default modules I loaded are not sufficient, because
I am
not doing more than 'simfactory/bin/sim setup' and 'simfactory/bin/sim build'. Could you please send me a 'module list' of your account to compare with mine? Best, Jose
On Fri, Feb 24, 2012 at 12:26 PM, Erik Schnetter schnetter@cct.lsu.edu wrote: > > Jose > > I just built the ET from scratch and ran the test cases there. All > went fine on Hopper, no problems at all. > > -erik > > On Fri, Feb 24, 2012 at 2:39 PM, Erik Schnetter > schnetter@cct.lsu.edu > wrote: > > On Fri, Feb 24, 2012 at 2:11 PM, Jose Fiestas Iquira > > jafiestas@lbl.gov > > wrote: > >> Hi Erik, > >> > >> I am getting in Hopper the same error after simfactory/bin/sim > >> build: > >> Using configuration: sim > >> Reconfiguring sim > >> Writing configuration to: > >> /global/u1/f/fiestas/CACTUS/Cactus/configs/sim/OptionList > >> /bin/bash: module: command not found > >> fiestas@hopper10:~/CACTUS/Cactus> exit > >> exit > >> > >> Could you install it without problems? > > > > Yes. I am not seeing these problems. Maybe they are specific to
your
> > account settings? Could you investigate where the "module"
command
> > is > > used? > > > >> A question. Should I set hopper10 as: > >> key allocation [] > > > > I don't know what you mean by this. > > > > The allocation on Hopper is the "repository" there; it is e.g. > > "m152" > > for me. > > > > -erik, > > > >> Thanks, > >> Jose > >> > >> > >> On Fri, Feb 24, 2012 at 10:45 AM, Jose Fiestas Iquira > >> jafiestas@lbl.gov > >> wrote: > >>> > >>> You mean this version? > >>> > >>>
http://svn.einsteintoolkit.org/manifest/trunk/einsteintoolkit.th
> >>> > >>> I am trying now in a new directory. I had installed Cactus, the > >>> Wavetoy > >>> and ETk in the same place and probably there were some
conflicts.
> >>> That > >>> is > >>> where I got the module error. Hope doing it new works well as
in
> >>> your > >>> case. > >>> Did you follow the tutorial in the ETK page for new users? > >>> > >>> Cheers, > >>> Jose > >>> > >>> > >>> > >>> > >>> On Fri, Feb 24, 2012 at 10:18 AM, Erik Schnetter > >>> schnetter@cct.lsu.edu > >>> wrote: > >>>> > >>>> Jose > >>>> > >>>> No, things didn't work on Carver. I received errors, but
didn't
> >>>> investigate, mostly because I dislike the PGI compiler. > >>>> > >>>> I'm building on Hopper as we speak, using the Intel compiler,
and
> >>>> things are going fine. > >>>> > >>>> I'm using the development version of the ET, not the release
from
> >>>> last > >>>> autumn, though. > >>>> > >>>> -erik > >>>> > >>>> On Fri, Feb 24, 2012 at 12:40 PM, Jose Fiestas Iquira > >>>> jafiestas@lbl.gov > >>>> wrote: > >>>> > Hi Erik, > >>>> > The problem with module (?) came actually when I tried it in > >>>> > Hopper. > >>>> > There > >>>> > is no special need for Carver, Hopper would be fine. Did
your
> >>>> > try > >>>> > in > >>>> > Carver > >>>> > worked, anyway? > >>>> > Best, > >>>> > Jose > >>>> > > >>>> > > >>>> > On Fri, Feb 24, 2012 at 9:14 AM, Erik Schnetter > >>>> > schnetter@cct.lsu.edu > >>>> > wrote: > >>>> >> > >>>> >> On Wed, Feb 22, 2012 at 8:38 PM, Jose Fiestas Iquira > >>>> >> jafiestas@lbl.gov > >>>> >> wrote: > >>>> >> > It was like these: > >>>> >> > .... > >>>> >> > COMPILING > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> >
/global/u1/f/fiestas/CACTUS/Cactus/arrangements/Carpet/LoopControl/src/loopcontrol.c
> >>>> >> > PGC-W-0155-parallel for loop variable must be local k > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> >
(/global/u1/f/fiestas/CACTUS/Cactus/configs/sim/build/LoopControl/loopcontrol.c:
> >>>> >> > 1080) > >>>> >> > PGC-S-0094-Illegal type conversion required > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> >
(/global/u1/f/fiestas/CACTUS/Cactus/configs/sim/build/LoopControl/loopcontrol.c:
> >>>> >> > 1080) > >>>> >> > PGC-S-0094-Illegal type conversion required > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> >
(/global/u1/f/fiestas/CACTUS/Cactus/configs/sim/build/LoopControl/loopcontrol.c:
> >>>> >> > 1080) > >>>> >> > PGC/x86-64 Linux 9.0-3: compilation completed with severe > >>>> >> > errors > >>>> >> > make[3]: *** [loopcontrol.c.o] Error 2 > >>>> >> > make[2]: *** [make.checked] Error 2 > >>>> >> > make[1]: *** > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> >
[/global/u1/f/fiestas/CACTUS/Cactus/configs/sim/lib/libthorn_LoopControl.a]
> >>>> >> > Error 2 > >>>> >> > make[1]: *** Waiting for unfinished jobs.... > >>>> >> > ..... > >>>> >> > COMPILING > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> >
/global/u1/f/fiestas/CACTUS/Cactus/arrangements/EinsteinInitialData/IDAxiBrillBH/src/ParamCheck.c
> >>>> >> > Creating > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> >
/global/u1/f/fiestas/CACTUS/Cactus/configs/sim/lib/libthorn_IDAnalyticBH.a
> >>>> >> > Creating > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> >
/global/u1/f/fiestas/CACTUS/Cactus/configs/sim/lib/libthorn_IDAxiBrillBH.a
> >>>> >> > Creating > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> > > >>>> >> >
/global/u1/f/fiestas/CACTUS/Cactus/configs/sim/lib/libthorn_IDAxiOddBrillBH.a
> >>>> >> > make: *** [sim] Error 2 > >>>> >> > > >>>> >> > I am trying hopper now. Let see. > >>>> >> > >>>> >> Is there a reason why you want to use Carver, or would
another
> >>>> >> machine > >>>> >> be fine as well? > >>>> >> > >>>> >> The PGI compilers are often a bit peculiar; I prefer the
Intel
> >>>> >> compilers. Let me try to build on Hopper -- this should
work
> >>>> >> fine, > >>>> >> I > >>>> >> can then help you there. > >>>> >> > >>>> >> -erik > >>>> >> > >>>> >> -- > >>>> >> Erik Schnetter schnetter@cct.lsu.edu > >>>> >> http://www.perimeterinstitute.ca/personal/eschnetter/ > >>>> > > >>>> > > >>>> > >>>> > >>>> > >>>> -- > >>>> Erik Schnetter schnetter@cct.lsu.edu > >>>> http://www.perimeterinstitute.ca/personal/eschnetter/ > >>> > >>> > >> > > > > > > > > -- > > Erik Schnetter schnetter@cct.lsu.edu > > http://www.perimeterinstitute.ca/personal/eschnetter/ > > > > -- > Erik Schnetter schnetter@cct.lsu.edu > http://www.perimeterinstitute.ca/personal/eschnetter/
-- Erik Schnetter schnetter@cct.lsu.edu http://www.perimeterinstitute.ca/personal/eschnetter/
-- Erik Schnetter schnetter@cct.lsu.edu http://www.perimeterinstitute.ca/personal/eschnetter/