Hello,
I got it to compile on High-Sierra with homebrewed gcc-8, after I reinstalled Xcode CLT and gcc.
The unavailability of the CLT might have been due to an access configuration reset by the new operating system.
Maria
_______________________ Dr. Maria C. Babiuc Hamilton Department of Physics Marshall University S257 Science Building Huntington, WV, 25755 Phone: (304)696-2754 https://works.bepress.com/maria_babiuc-hamilton/ ________________________________ From: users-bounces@einsteintoolkit.org users-bounces@einsteintoolkit.org on behalf of Hamilton, Maria babiuc@marshall.edu Sent: Tuesday, November 14, 2017 11:20 AM To: Ian Hinder Cc: users@einsteintoolkit.org Subject: Re: [Users] Error in thorn Vectors
Ian,
Yes, all packages are installed. I am attaching the list of brewed packages.
However, when I test them, gcc and open-mpi are failing.
Here is the error:
brew test gcc Testing gcc ==> /usr/local/Cellar/gcc/7.2.0/bin/gcc-7 -o hello-c hello-c.c ==> /usr/local/Cellar/gcc/7.2.0/bin/g++-7 -o hello-cc hello-cc.cc Last 15 lines from /Users/babiuc/Library/Logs/Homebrew/gcc/test.02.g++-7: hello-cc.cc
In file included from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/ext/string_conversions.h:41:0, from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/bits/basic_string.h:6159, from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/string:52, from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/bits/locale_classes.h:40, from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/bits/ios_base.h:41, from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/ios:42, from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/ostream:38, from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/iostream:39, from hello-cc.cc:1: /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory #include_next <stdlib.h> ^~~~~~~~~~ compilation terminated. Error: gcc: failed
brew test open-mpi Testing open-mpi ==> /usr/local/Cellar/open-mpi/3.0.0/bin/mpicc hello.c -o hello ==> ./hello ==> /usr/local/Cellar/open-mpi/3.0.0/bin/mpirun -np 4 ./hello Last 15 lines from /Users/babiuc/Library/Logs/Homebrew/open-mpi/test.03.mpirun: 2017-11-14 11:04:49 -0500
/usr/local/Cellar/open-mpi/3.0.0/bin/mpirun -np 4 ./hello
-------------------------------------------------------------------------- There are not enough slots available in the system to satisfy the 4 slots that were requested by the application: ./hello
Either request fewer slots for your application, or make more slots available for use. -------------------------------------------------------------------------- Error: open-mpi: failed Failed executing: /usr/local/Cellar/open-mpi/3.0.0/bin/mpirun -np 4 ./hello
I am reinstalling them now, and test them again.
_______________________ Dr. Maria C. Babiuc Hamilton Department of Physics Marshall University S257 Science Building Huntington, WV, 25755 Phone: (304)696-2754 https://works.bepress.com/maria_babiuc-hamilton/ ________________________________ From: Ian Hinder ian.hinder@aei.mpg.de Sent: Tuesday, November 14, 2017 3:41 AM To: Hamilton, Maria Cc: Eloisa Bentivegna; Einstein Toolkit Users Subject: Re: [Users] Error in thorn Vectors
On 14 Nov 2017, at 01:12, Hamilton, Maria <babiuc@marshall.edumailto:babiuc@marshall.edu> wrote:
Hello,
Yes, previously I had the error in thorns Vectors, and I followed the suggestion to use the current stable version of Cactus.
I am not using simfactory, but this command: make ET-config options=simfactory/mdb/optionlists/osx-homebrew.cfg THORNLIST=thornlists/einsteintoolkit.thhttp://einsteintoolkit.th
The error is: checking for M_PI... no configure: error: M_PI not defined. Try adding -D_XOPEN_SOURCE to CPPFLAGS.
Here is what I tried to add to CPPFLAGS: -D_USE_MATH_DEFINES -D_XOPEN_SOURCE -DM_PI = 3.14149265358979323847
I also tried to change c11 to c99 at CFLAGS and add -stdlib=libc++ at LIBCXX.
None of those worked.
Please let me know what is to be done.
Hi Maria,
Have you installed all the homebrew packages listed at the top of osx-homebrew.cfg?
-- Ian Hinder http://members.aei.mpg.de/ianhin