Dear Users, I am configuring ET in SimFactory, I am using Jupyter in virtual env, unfortunately, found an error
%%bash
./simfactory/bin/sim setup-silent
Warning: Unable to determine CACTUS_PATH, using /home/bilal/Cactus/repos/simfactory2 instead
Here we will define some necessary Simulation Factory defaults.
"
Hello Bilal,
Simfactoy tries to determine if it is in the "Cactus" directory by looking for a file "src/interface.ccl" in that directory.
Does such a file exist for you? If not, did you encounter any issue with GetComponents (eg is the directory repos/flesh populated and does "src" point to the "src" directory in there)?
Yours, Roland
Dear Users, I am configuring ET in SimFactory, I am using Jupyter in virtual env, unfortunately, found an error
%%bash
./simfactory/bin/sim setup-silent
Warning: Unable to determine CACTUS_PATH, using /home/bilal/Cactus/repos/simfactory2 instead
Here we will define some necessary Simulation Factory defaults.
"
Dear Roland No, I don't have such a file.
On Tue, Oct 19, 2021 at 8:30 PM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
Simfactoy tries to determine if it is in the "Cactus" directory by looking for a file "src/interface.ccl" in that directory.
Does such a file exist for you? If not, did you encounter any issue with GetComponents (eg is the directory repos/flesh populated and does "src" point to the "src" directory in there)?
Yours, Roland
Dear Users, I am configuring ET in SimFactory, I am using Jupyter in virtual env, unfortunately, found an error
%%bash
./simfactory/bin/sim setup-silent
Warning: Unable to determine CACTUS_PATH, using /home/bilal/Cactus/repos/simfactory2 instead
Here we will define some necessary Simulation Factory defaults.
"
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .
Dear Roland, Hmmm, my Getcomponent command didn't run properly.
On Tue, Oct 19, 2021 at 8:51 PM Bilal Hameed bilalhameedawan962@gmail.com wrote:
Dear Roland No, I don't have such a file.
On Tue, Oct 19, 2021 at 8:30 PM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
Simfactoy tries to determine if it is in the "Cactus" directory by looking for a file "src/interface.ccl" in that directory.
Does such a file exist for you? If not, did you encounter any issue with GetComponents (eg is the directory repos/flesh populated and does "src" point to the "src" directory in there)?
Yours, Roland
Dear Users, I am configuring ET in SimFactory, I am using Jupyter in virtual env, unfortunately, found an error
%%bash
./simfactory/bin/sim setup-silent
Warning: Unable to determine CACTUS_PATH, using /home/bilal/Cactus/repos/simfactory2 instead
Here we will define some necessary Simulation Factory defaults.
"
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .
Hello Bilal,
Hmmm, my Getcomponent command didn't run properly.
Does / did re-running GetComponents fix the issue?
Yours, Roland
Dear Roland, I tried 3 times but it's not working, maybe I have a weak internet connection. Still, I am trying to run this command.
On Thu, Oct 21, 2021, 3:56 AM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
Hmmm, my Getcomponent command didn't run properly.
Does / did re-running GetComponents fix the issue?
Yours, Roland
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://keys.gnupg.net.
Dear Roland, Again its failed,
Summary of Warnings:
Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not checkout module ./simfactory
fatal: unable to access 'https://bitbucket.org/simfactory/simfactory2.git/': Operation timed out after 300036 milliseconds with 0 out of 0 bytes received
Could not checkout module CTThorns/CT_Analytic
fatal: unable to access 'https://bitbucket.org/eloisa/ctthorns.git/': gnutls_handshake() failed: Error in the pull function.
Could not update cactuspugh. Could not update remote 'origin'. Could not checkout module ExternalLibraries/libjpeg svn: E170013: Unable to connect to a repository at URL 'https://github.com/EinsteinToolkit/ExternalLibraries-libjpeg.git/branches/ET...' svn: E670003: Temporary failure in name resolution
Could not checkout module CactusConnect/HTTPD
fatal: unable to access 'https://bitbucket.org/cactuscode/cactusconnect.git/': Could not resolve host: bitbucket.org
Could not checkout module CactusConnect/HTTPDExtra
fatal: unable to access 'https://bitbucket.org/cactuscode/cactusconnect.git/': Could not resolve host: bitbucket.org
Could not checkout module CactusConnect/Socket
fatal: unable to access 'https://bitbucket.org/cactuscode/cactusconnect.git/': Could not resolve host: bitbucket.org
Could not checkout module ExternalLibraries/HDF5 svn: E170013: Unable to connect to a repository at URL 'https://github.com/EinsteinToolkit/ExternalLibraries-HDF5.git/branches/ET_20...' svn: E175012: Connection timed out
Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not checkout module EinsteinExact/doc
fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': Could not resolve host: github.com
Could not checkout module EinsteinExact/m
fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': Could not resolve host: github.com
Could not checkout module WVUThorns_Diagnostics/particle_tracerET
fatal: unable to access 'https://bitbucket.org/zach_etienne/wvuthorns_diagnostics.git/': Could not resolve host: bitbucket.org
Could not checkout module ExternalLibraries/PAPI svn: E670003: Temporary failure in name resolution
Time Elapsed: 17 minutes, 12 seconds
Warning: Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not checkout module ./simfactory
fatal: unable to access 'https://bitbucket.org/simfactory/simfactory2.git/': Operation timed out after 300036 milliseconds with 0 out of 0 bytes received
Warning: Could not checkout module CTThorns/CT_Analytic
fatal: unable to access 'https://bitbucket.org/eloisa/ctthorns.git/': gnutls_handshake() failed: Error in the pull function.
Warning: Could not update cactuspugh. Could not update remote 'origin'.
Warning: Could not checkout module ExternalLibraries/libjpeg svn: E170013: Unable to connect to a repository at URL 'https://github.com/EinsteinToolkit/ExternalLibraries-libjpeg.git/branches/ET...' svn: E670003: Temporary failure in name resolution
Warning: Could not checkout module CactusConnect/HTTPD
fatal: unable to access 'https://bitbucket.org/cactuscode/cactusconnect.git/': Could not resolve host: bitbucket.org
Warning: Could not checkout module CactusConnect/HTTPDExtra
fatal: unable to access 'https://bitbucket.org/cactuscode/cactusconnect.git/': Could not resolve host: bitbucket.org
Warning: Could not checkout module CactusConnect/Socket
fatal: unable to access 'https://bitbucket.org/cactuscode/cactusconnect.git/': Could not resolve host: bitbucket.org
Warning: Could not checkout module ExternalLibraries/HDF5 svn: E170013: Unable to connect to a repository at URL 'https://github.com/EinsteinToolkit/ExternalLibraries-HDF5.git/branches/ET_20...' svn: E175012: Connection timed out
Warning: Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not checkout module EinsteinExact/doc
fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': Could not resolve host: github.com
Warning: Could not checkout module EinsteinExact/m
fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': Could not resolve host: github.com
Warning: Could not checkout module WVUThorns_Diagnostics/particle_tracerET
fatal: unable to access 'https://bitbucket.org/zach_etienne/wvuthorns_diagnostics.git/': Could not resolve host: bitbucket.org
Warning: Could not checkout module ExternalLibraries/PAPI svn: E670003: Temporary failure in name resolution
---------------------------------------------------------------------------CalledProcessError Traceback (most recent call last)/tmp/ipykernel_2908/1227884827.py in <module>----> 1 get_ipython().run_cell_magic('bash', '', './GetComponents --parallel https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2021_05/einsteintoolki...') ~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/interactiveshell.py in run_cell_magic(self, magic_name, line, cell) 2404 with self.builtin_trap: 2405 args = (magic_arg_s, cell)-> 2406 result = fn(*args, **kwargs) 2407 return result 2408 ~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magics/script.py in named_script_magic(line, cell) 140 else: 141 line = script--> 142 return self.shebang(line, cell) 143 144 # write a basic docstring: ~/my_project_dir/my_project_env/lib/python3.8/site-packages/decorator.py in fun(*args, **kw) 230 if not kwsyntax: 231 args, kw = fix(args, kw, sig)--> 232 return caller(func, *(extras + args), **kw) 233 fun.__name__ = func.__name__ 234 fun.__doc__ = func.__doc__ ~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magic.py in <lambda>(f, *a, **k) 185 # but it's overkill for just that one bit of state. 186 def magic_deco(arg):--> 187 call = lambda f, *a, **k: f(*a, **k) 188 189 if callable(arg): ~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magics/script.py in shebang(self, line, cell) 243 sys.stderr.flush() 244 if args.raise_error and p.returncode!=0:--> 245 raise CalledProcessError(p.returncode, cell, output=out, stderr=err) 246 247 def _run_script(self, p, cell, to_close): CalledProcessError: Command 'b'./GetComponents --parallel https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2021_05/einsteintoolki...'' returned non-zero exit status 1.
On Thu, Oct 21, 2021 at 2:53 PM Bilal Hameed bilalhameedawan962@gmail.com wrote:
Dear Roland, I tried 3 times but it's not working, maybe I have a weak internet connection. Still, I am trying to run this command.
On Thu, Oct 21, 2021, 3:56 AM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
Hmmm, my Getcomponent command didn't run properly.
Does / did re-running GetComponents fix the issue?
Yours, Roland
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://keys.gnupg.net.
Hello Bilal,
please use --no-parallel. Not --parallel.
You may be getting blocked due to too many connections and using --parallel will make this worse.
Yours, Roland
Dear Roland, Again its failed,
Summary of Warnings:
Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not checkout module ./simfactory
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/simfactory/simfactory2.git... ': Operation timed out after 300036 milliseconds with 0 out of 0 bytes received
Could not checkout module CTThorns/CT_Analytic
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/eloisa/ctthorns.git/__;!!D... ': gnutls_handshake() failed: Error in the pull function.
Could not update cactuspugh. Could not update remote 'origin'. Could not checkout module ExternalLibraries/libjpeg svn: E170013: Unable to connect to a repository at URL 'https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... ' svn: E670003: Temporary failure in name resolution
Could not checkout module CactusConnect/HTTPD
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not resolve host: bitbucket.org
Could not checkout module CactusConnect/HTTPDExtra
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not resolve host: bitbucket.org
Could not checkout module CactusConnect/Socket
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not resolve host: bitbucket.org
Could not checkout module ExternalLibraries/HDF5 svn: E170013: Unable to connect to a repository at URL 'https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... ' svn: E175012: Connection timed out
Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not checkout module EinsteinExact/doc
fatal: unable to access 'https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not resolve host: github.com
Could not checkout module EinsteinExact/m
fatal: unable to access 'https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not resolve host: github.com
Could not checkout module WVUThorns_Diagnostics/particle_tracerET
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/zach_etienne/wvuthorns_dia... ': Could not resolve host: bitbucket.org
Could not checkout module ExternalLibraries/PAPI svn: E670003: Temporary failure in name resolution
Time Elapsed: 17 minutes, 12 seconds
Warning: Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not checkout module ./simfactory
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/simfactory/simfactory2.git... ': Operation timed out after 300036 milliseconds with 0 out of 0 bytes received
Warning: Could not checkout module CTThorns/CT_Analytic
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/eloisa/ctthorns.git/__;!!D... ': gnutls_handshake() failed: Error in the pull function.
Warning: Could not update cactuspugh. Could not update remote 'origin'.
Warning: Could not checkout module ExternalLibraries/libjpeg svn: E170013: Unable to connect to a repository at URL 'https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... ' svn: E670003: Temporary failure in name resolution
Warning: Could not checkout module CactusConnect/HTTPD
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not resolve host: bitbucket.org
Warning: Could not checkout module CactusConnect/HTTPDExtra
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not resolve host: bitbucket.org
Warning: Could not checkout module CactusConnect/Socket
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not resolve host: bitbucket.org
Warning: Could not checkout module ExternalLibraries/HDF5 svn: E170013: Unable to connect to a repository at URL 'https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... ' svn: E175012: Connection timed out
Warning: Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not checkout module EinsteinExact/doc
fatal: unable to access 'https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not resolve host: github.com
Warning: Could not checkout module EinsteinExact/m
fatal: unable to access 'https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not resolve host: github.com
Warning: Could not checkout module WVUThorns_Diagnostics/particle_tracerET
fatal: unable to access 'https://urldefense.com/v3/__https://bitbucket.org/zach_etienne/wvuthorns_dia... ': Could not resolve host: bitbucket.org
Warning: Could not checkout module ExternalLibraries/PAPI svn: E670003: Temporary failure in name resolution
---------------------------------------------------------------------------CalledProcessError Traceback (most recent call last)/tmp/ipykernel_2908/1227884827.py in <module>----> 1 get_ipython().run_cell_magic('bash', '', './GetComponents --parallel https://urldefense.com/v3/__https://bitbucket.org/einsteintoolkit/manifest/r... ') ~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/interactiveshell.py in run_cell_magic(self, magic_name, line, cell) 2404 with self.builtin_trap: 2405 args = (magic_arg_s, cell)-> 2406 result = fn(*args, **kwargs) 2407 return result 2408 ~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magics/script.py in named_script_magic(line, cell) 140 else: 141 line = script--> 142 return self.shebang(line, cell) 143 144 # write a basic docstring: ~/my_project_dir/my_project_env/lib/python3.8/site-packages/decorator.py in fun(*args, **kw) 230 if not kwsyntax: 231 args, kw = fix(args, kw, sig)--> 232 return caller(func, *(extras + args), **kw) 233 fun.__name__ = func.__name__ 234 fun.__doc__ = func.__doc__ ~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magic.py in <lambda>(f, *a, **k) 185 # but it's overkill for just that one bit of state. 186 def magic_deco(arg):--> 187 call = lambda f, *a, **k: f(*a, **k) 188 189 if callable(arg): ~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magics/script.py in shebang(self, line, cell) 243 sys.stderr.flush() 244 if args.raise_error and p.returncode!=0:--> 245 raise CalledProcessError(p.returncode, cell, output=out, stderr=err) 246 247 def _run_script(self, p, cell, to_close): CalledProcessError: Command 'b'./GetComponents --parallel https://urldefense.com/v3/__https://bitbucket.org/einsteintoolkit/manifest/r... '' returned non-zero exit status 1.
On Thu, Oct 21, 2021 at 2:53 PM Bilal Hameed bilalhameedawan962@gmail.com wrote:
Dear Roland, I tried 3 times but it's not working, maybe I have a weak internet connection. Still, I am trying to run this command.
On Thu, Oct 21, 2021, 3:56 AM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
Hmmm, my Getcomponent command didn't run properly.
Does / did re-running GetComponents fix the issue?
Yours, Roland
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from https://urldefense.com/v3/__http://keys.gnupg.net__;!!DZ3fjg!oDN7Ri_HipYq4rW... .
Dear Roland, Firstly, thank you so much I am almost done but still one issue in GetComponent command,
Wide character in print at ./GetComponents line 2733.
On Thu, Oct 21, 2021 at 8:45 PM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
please use --no-parallel. Not --parallel.
You may be getting blocked due to too many connections and using --parallel will make this worse.
Yours, Roland
Dear Roland, Again its failed,
Summary of Warnings:
Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not checkout module ./simfactory
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/simfactory/simfactory2.git... ': Operation timed
out after 300036 milliseconds with 0 out of 0 bytes received
Could not checkout module CTThorns/CT_Analytic
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/eloisa/ctthorns.git/__;!!D... ':
gnutls_handshake() failed: Error in the pull function.
Could not update cactuspugh. Could not update remote 'origin'. Could not checkout module ExternalLibraries/libjpeg svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E670003: Temporary failure in name resolution
Could not checkout module CactusConnect/HTTPD
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Could not checkout module CactusConnect/HTTPDExtra
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Could not checkout module CactusConnect/Socket
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Could not checkout module ExternalLibraries/HDF5 svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E175012: Connection timed out
Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not checkout module EinsteinExact/doc
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Could not checkout module EinsteinExact/m
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Could not checkout module WVUThorns_Diagnostics/particle_tracerET
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/zach_etienne/wvuthorns_dia... ': Could
not resolve host: bitbucket.org
Could not checkout module ExternalLibraries/PAPI svn: E670003: Temporary failure in name resolution
Time Elapsed: 17 minutes, 12 seconds
Warning: Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not checkout module ./simfactory
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/simfactory/simfactory2.git... ': Operation timed
out after 300036 milliseconds with 0 out of 0 bytes received
Warning: Could not checkout module CTThorns/CT_Analytic
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/eloisa/ctthorns.git/__;!!D... ':
gnutls_handshake() failed: Error in the pull function.
Warning: Could not update cactuspugh. Could not update remote 'origin'.
Warning: Could not checkout module ExternalLibraries/libjpeg svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E670003: Temporary failure in name resolution
Warning: Could not checkout module CactusConnect/HTTPD
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Warning: Could not checkout module CactusConnect/HTTPDExtra
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Warning: Could not checkout module CactusConnect/Socket
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Warning: Could not checkout module ExternalLibraries/HDF5 svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E175012: Connection timed out
Warning: Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not checkout module EinsteinExact/doc
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Warning: Could not checkout module EinsteinExact/m
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Warning: Could not checkout module
WVUThorns_Diagnostics/particle_tracerET
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/zach_etienne/wvuthorns_dia... ': Could
not resolve host: bitbucket.org
Warning: Could not checkout module ExternalLibraries/PAPI svn: E670003: Temporary failure in name resolution
---------------------------------------------------------------------------CalledProcessError
Traceback (most recent calllast)/tmp/ipykernel_2908/1227884827.py in <module>----> 1 get_ipython().run_cell_magic('bash', '', './GetComponents --parallel
https://urldefense.com/v3/__https://bitbucket.org/einsteintoolkit/manifest/r... ')
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/interactiveshell.py
in run_cell_magic(self, magic_name, line, cell) 2404 with self.builtin_trap: 2405 args = (magic_arg_s, cell)-> 2406 result = fn(*args, **kwargs) 2407 return result 2408
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magics/script.py
in named_script_magic(line, cell) 140 else: 141 line = script--> 142 return self.shebang(line, cell) 143 144 # write a basic docstring: ~/my_project_dir/my_project_env/lib/python3.8/site-packages/decorator.py in fun(*args, **kw) 230 if not kwsyntax: 231 args, kw = fix(args, kw, sig)--> 232 return caller(func, *(extras + args), **kw) 233 fun.__name__ = func.__name__ 234 fun.__doc__ = func.__doc__
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magic.py
in <lambda>(f, *a, **k) 185 # but it's overkill for just that one bit of state. 186 def magic_deco(arg):--> 187 call = lambda f, *a, **k: f(*a, **k) 188 189 if callable(arg):
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magics/script.py
in shebang(self, line, cell) 243 sys.stderr.flush() 244 if args.raise_error and p.returncode!=0:--> 245 raise CalledProcessError(p.returncode, cell, output=out, stderr=err) 246 247 def _run_script(self, p, cell, to_close): CalledProcessError: Command 'b'./GetComponents --parallel
https://urldefense.com/v3/__https://bitbucket.org/einsteintoolkit/manifest/r... ''
returned non-zero exit status 1.
On Thu, Oct 21, 2021 at 2:53 PM Bilal Hameed <
bilalhameedawan962@gmail.com>
wrote:
Dear Roland, I tried 3 times but it's not working, maybe I have a weak internet connection. Still, I am trying to run this command.
On Thu, Oct 21, 2021, 3:56 AM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
Hmmm, my Getcomponent command didn't run properly.
Does / did re-running GetComponents fix the issue?
Yours, Roland
-- My email is as private as my paper mail. I therefore support
encrypting
and signing email messages. Get my PGP key from
https://urldefense.com/v3/__http://keys.gnupg.net__;!!DZ3fjg!oDN7Ri_HipYq4rW... .
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu . _______________________________________________ Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
295 components checked out. 0 components updated.
Unable to process .clang-format
Summary of Warnings:
Could not checkout module .clang-format
fatal: the remote end hung up unexpectedly fatal: early EOF fatal: index-pack failed
Time Elapsed: 44 minutes, 5 seconds
Wide character in print at ./GetComponents line 2733. Warning: Could not checkout module .clang-format
fatal: the remote end hung up unexpectedly fatal: early EOF fatal: index-pack failed
Wide character in print at ./GetComponents line 2733.
On Fri, Oct 22, 2021 at 3:54 PM Bilal Hameed bilalhameedawan962@gmail.com wrote:
Dear Roland, Firstly, thank you so much I am almost done but still one issue in GetComponent command,
Wide character in print at ./GetComponents line 2733.
On Thu, Oct 21, 2021 at 8:45 PM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
please use --no-parallel. Not --parallel.
You may be getting blocked due to too many connections and using --parallel will make this worse.
Yours, Roland
Dear Roland, Again its failed,
Summary of Warnings:
Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not checkout module ./simfactory
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/simfactory/simfactory2.git... ': Operation timed
out after 300036 milliseconds with 0 out of 0 bytes received
Could not checkout module CTThorns/CT_Analytic
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/eloisa/ctthorns.git/__;!!D... ':
gnutls_handshake() failed: Error in the pull function.
Could not update cactuspugh. Could not update remote 'origin'. Could not checkout module ExternalLibraries/libjpeg svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E670003: Temporary failure in name resolution
Could not checkout module CactusConnect/HTTPD
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Could not checkout module CactusConnect/HTTPDExtra
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Could not checkout module CactusConnect/Socket
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Could not checkout module ExternalLibraries/HDF5 svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E175012: Connection timed out
Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not checkout module EinsteinExact/doc
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Could not checkout module EinsteinExact/m
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Could not checkout module WVUThorns_Diagnostics/particle_tracerET
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/zach_etienne/wvuthorns_dia... ': Could
not resolve host: bitbucket.org
Could not checkout module ExternalLibraries/PAPI svn: E670003: Temporary failure in name resolution
Time Elapsed: 17 minutes, 12 seconds
Warning: Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not checkout module ./simfactory
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/simfactory/simfactory2.git... ': Operation timed
out after 300036 milliseconds with 0 out of 0 bytes received
Warning: Could not checkout module CTThorns/CT_Analytic
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/eloisa/ctthorns.git/__;!!D... ':
gnutls_handshake() failed: Error in the pull function.
Warning: Could not update cactuspugh. Could not update remote 'origin'.
Warning: Could not checkout module ExternalLibraries/libjpeg svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E670003: Temporary failure in name resolution
Warning: Could not checkout module CactusConnect/HTTPD
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Warning: Could not checkout module CactusConnect/HTTPDExtra
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Warning: Could not checkout module CactusConnect/Socket
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Warning: Could not checkout module ExternalLibraries/HDF5 svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E175012: Connection timed out
Warning: Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not checkout module EinsteinExact/doc
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Warning: Could not checkout module EinsteinExact/m
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Warning: Could not checkout module
WVUThorns_Diagnostics/particle_tracerET
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/zach_etienne/wvuthorns_dia... ': Could
not resolve host: bitbucket.org
Warning: Could not checkout module ExternalLibraries/PAPI svn: E670003: Temporary failure in name resolution
---------------------------------------------------------------------------CalledProcessError
Traceback (most recent calllast)/tmp/ipykernel_2908/1227884827.py in <module>----> 1 get_ipython().run_cell_magic('bash', '', './GetComponents --parallel
https://urldefense.com/v3/__https://bitbucket.org/einsteintoolkit/manifest/r... ')
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/interactiveshell.py
in run_cell_magic(self, magic_name, line, cell) 2404 with self.builtin_trap: 2405 args = (magic_arg_s, cell)-> 2406 result = fn(*args, **kwargs) 2407 return result 2408
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magics/script.py
in named_script_magic(line, cell) 140 else: 141 line = script--> 142 return self.shebang(line, cell) 143 144 # write a basic docstring: ~/my_project_dir/my_project_env/lib/python3.8/site-packages/decorator.py in fun(*args, **kw) 230 if not kwsyntax: 231 args, kw = fix(args, kw, sig)--> 232 return caller(func, *(extras + args), **kw) 233 fun.__name__ = func.__name__ 234 fun.__doc__ = func.__doc__
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magic.py
in <lambda>(f, *a, **k) 185 # but it's overkill for just that one bit of state. 186 def magic_deco(arg):--> 187 call = lambda f, *a, **k: f(*a, **k) 188 189 if callable(arg):
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magics/script.py
in shebang(self, line, cell) 243 sys.stderr.flush() 244 if args.raise_error and p.returncode!=0:--> 245 raise CalledProcessError(p.returncode, cell, output=out, stderr=err) 246 247 def _run_script(self, p, cell, to_close): CalledProcessError: Command 'b'./GetComponents --parallel
https://urldefense.com/v3/__https://bitbucket.org/einsteintoolkit/manifest/r... ''
returned non-zero exit status 1.
On Thu, Oct 21, 2021 at 2:53 PM Bilal Hameed <
bilalhameedawan962@gmail.com>
wrote:
Dear Roland, I tried 3 times but it's not working, maybe I have a weak internet connection. Still, I am trying to run this command.
On Thu, Oct 21, 2021, 3:56 AM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
Hmmm, my Getcomponent command didn't run properly.
Does / did re-running GetComponents fix the issue?
Yours, Roland
-- My email is as private as my paper mail. I therefore support
encrypting
and signing email messages. Get my PGP key from
https://urldefense.com/v3/__http://keys.gnupg.net__;!!DZ3fjg!oDN7Ri_HipYq4rW... .
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu . _______________________________________________ Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
Dear Roland, I am getting following error again and again
Wide character in print at ./GetComponents line 2733.
On Sun, Oct 24, 2021 at 11:57 AM Bilal Hameed bilalhameedawan962@gmail.com wrote:
295 components checked out. 0 components updated.
Unable to process .clang-format
Summary of Warnings:
Could not checkout module .clang-format
fatal: the remote end hung up unexpectedly fatal: early EOF fatal: index-pack failed
Time Elapsed: 44 minutes, 5 seconds
Wide character in print at ./GetComponents line 2733. Warning: Could not checkout module .clang-format
fatal: the remote end hung up unexpectedly fatal: early EOF fatal: index-pack failed
Wide character in print at ./GetComponents line 2733.
On Fri, Oct 22, 2021 at 3:54 PM Bilal Hameed bilalhameedawan962@gmail.com wrote:
Dear Roland, Firstly, thank you so much I am almost done but still one issue in GetComponent command,
Wide character in print at ./GetComponents line 2733.
On Thu, Oct 21, 2021 at 8:45 PM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
please use --no-parallel. Not --parallel.
You may be getting blocked due to too many connections and using --parallel will make this worse.
Yours, Roland
Dear Roland, Again its failed,
Summary of Warnings:
Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not checkout module ./simfactory
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/simfactory/simfactory2.git... ': Operation timed
out after 300036 milliseconds with 0 out of 0 bytes received
Could not checkout module CTThorns/CT_Analytic
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/eloisa/ctthorns.git/__;!!D... ':
gnutls_handshake() failed: Error in the pull function.
Could not update cactuspugh. Could not update remote 'origin'. Could not checkout module ExternalLibraries/libjpeg svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E670003: Temporary failure in name resolution
Could not checkout module CactusConnect/HTTPD
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Could not checkout module CactusConnect/HTTPDExtra
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Could not checkout module CactusConnect/Socket
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Could not checkout module ExternalLibraries/HDF5 svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E175012: Connection timed out
Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not checkout module EinsteinExact/doc
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Could not checkout module EinsteinExact/m
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Could not checkout module WVUThorns_Diagnostics/particle_tracerET
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/zach_etienne/wvuthorns_dia... ': Could
not resolve host: bitbucket.org
Could not checkout module ExternalLibraries/PAPI svn: E670003: Temporary failure in name resolution
Time Elapsed: 17 minutes, 12 seconds
Warning: Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not checkout module ./simfactory
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/simfactory/simfactory2.git... ': Operation timed
out after 300036 milliseconds with 0 out of 0 bytes received
Warning: Could not checkout module CTThorns/CT_Analytic
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/eloisa/ctthorns.git/__;!!D... ':
gnutls_handshake() failed: Error in the pull function.
Warning: Could not update cactuspugh. Could not update remote 'origin'.
Warning: Could not checkout module ExternalLibraries/libjpeg svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E670003: Temporary failure in name resolution
Warning: Could not checkout module CactusConnect/HTTPD
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Warning: Could not checkout module CactusConnect/HTTPDExtra
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Warning: Could not checkout module CactusConnect/Socket
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/cactuscode/cactusconnect.g... ': Could not
resolve host: bitbucket.org
Warning: Could not checkout module ExternalLibraries/HDF5 svn: E170013: Unable to connect to a repository at URL '
https://urldefense.com/v3/__https://github.com/EinsteinToolkit/ExternalLibra... '
svn: E175012: Connection timed out
Warning: Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
Warning: Could not checkout module EinsteinExact/doc
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Warning: Could not checkout module EinsteinExact/m
fatal: unable to access '
https://urldefense.com/v3/__https://github.com/barrywardell/EinsteinExact.gi... ': Could not
resolve host: github.com
Warning: Could not checkout module
WVUThorns_Diagnostics/particle_tracerET
fatal: unable to access '
https://urldefense.com/v3/__https://bitbucket.org/zach_etienne/wvuthorns_dia... ': Could
not resolve host: bitbucket.org
Warning: Could not checkout module ExternalLibraries/PAPI svn: E670003: Temporary failure in name resolution
---------------------------------------------------------------------------CalledProcessError
Traceback (most recent calllast)/tmp/ipykernel_2908/1227884827.py in <module>----> 1 get_ipython().run_cell_magic('bash', '', './GetComponents --parallel
https://urldefense.com/v3/__https://bitbucket.org/einsteintoolkit/manifest/r... ')
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/interactiveshell.py
in run_cell_magic(self, magic_name, line, cell) 2404 with self.builtin_trap: 2405 args = (magic_arg_s, cell)-> 2406 result = fn(*args, **kwargs) 2407 return result 2408
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magics/script.py
in named_script_magic(line, cell) 140 else: 141 line = script--> 142 return self.shebang(line, cell) 143 144 # write a basic docstring:
~/my_project_dir/my_project_env/lib/python3.8/site-packages/decorator.py
in fun(*args, **kw) 230 if not kwsyntax: 231 args, kw = fix(args, kw, sig)--> 232 return caller(func, *(extras + args), **kw) 233 fun.__name__ = func.__name__ 234 fun.__doc__ = func.__doc__
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magic.py
in <lambda>(f, *a, **k) 185 # but it's overkill for just that one bit of state. 186 def magic_deco(arg):--> 187 call = lambda f, *a, **k: f(*a, **k) 188 189 if callable(arg):
~/my_project_dir/my_project_env/lib/python3.8/site-packages/IPython/core/magics/script.py
in shebang(self, line, cell) 243 sys.stderr.flush() 244 if args.raise_error and p.returncode!=0:--> 245 raise CalledProcessError(p.returncode, cell, output=out, stderr=err) 246 247 def _run_script(self, p, cell, to_close): CalledProcessError: Command 'b'./GetComponents --parallel
https://urldefense.com/v3/__https://bitbucket.org/einsteintoolkit/manifest/r... ''
returned non-zero exit status 1.
On Thu, Oct 21, 2021 at 2:53 PM Bilal Hameed <
bilalhameedawan962@gmail.com>
wrote:
Dear Roland, I tried 3 times but it's not working, maybe I have a weak internet connection. Still, I am trying to run this command.
On Thu, Oct 21, 2021, 3:56 AM Roland Haas rhaas@illinois.edu
wrote:
Hello Bilal,
> Hmmm, my Getcomponent command didn't run properly. Does / did re-running GetComponents fix the issue?
Yours, Roland
-- My email is as private as my paper mail. I therefore support
encrypting
and signing email messages. Get my PGP key from
https://urldefense.com/v3/__http://keys.gnupg.net__;!!DZ3fjg!oDN7Ri_HipYq4rW... .
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu . _______________________________________________ Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
Hello Bilal,
I am getting following error again and again
at ./GetComponents line 2733.
That is only a warning and does not cause GetComponents to abort.
It is caused by perl trying to output a wide (non ascii mostly) character. Eg if you have your language set to a non-English language and output of some program contains say a Greek letter α then you would get this warning when GetComponents tries to write that text to its log file.
Nothing aborts though so you can ignore this. Technical details are eg here:
https://www.perlmonks.org/?node_id=613765
Getting rid of it is complicated by the fact that we don't know what text encoding you are using (could be ASCII, could be UTF-8, could be latin1, ...) and getting that information in Perl requires an external module that I would rather not use in a basic tool like GetComponents (since the module may or may not exist on any given system).
Summary of Warnings:
Could not checkout module .clang-format
fatal: the remote end hung up unexpectedly fatal: early EOF fatal: index-pack failed
This, however is an actual error. Looking at the thornlist (einsteintoolkit.th)
!TARGET = $ROOT !TYPE = git !URL = https://bitbucket.org/cactuscode/cactus.git !NAME = flesh !CHECKOUT = .clang-format CONTRIBUTORS COPYRIGHT doc lib Makefile src
this is from the repository at https://bitbucket.org/cactuscode/cactus.git
And somehow bitbucket closes the connection when you try to download the repository.
I cannot say why this may be happening. Certainly we normally have no issues with BitBucket (GitHub is a bit more troublesome).
The only reason I can see would be too many connections to bitbucket or being blocked for some other reason (if e.g. bitbucket blocked all connections from some countries and you were in one of those countries).
All I can really suggest is to:
1. check whether the repository (in repos/flesh since !NAME is flesh) is complete or not (eg if "git status" works and there are files checked out) 2. if incomplete, try a "git pull" in there 3. if broken, remove the directory and run GetComponents once more (making very sure to use --no-parallel and not request updates of existing repositories) 4. if indeed complete, check that the various files listed in the CHECKOUT line exist as symbolic links in you main Cactus directory and point to the same named files in flesh. 5. if they don't try GetComponents once more (making very sure to use --no-parallel and not request updates of existing repositories) 6. if that does not help: create the symbolic links by hand
If all else fails, you could download on a system known to work (e.g. the tutorial server) tar up the Cactus directory and download the tarball (eg via jupyter's download file option). This is obviously not a very convenient solution.
You are trying this with --no-parallel, are you?
Out of curiosity (and you may want to reply only to me with these if you do not want this to appear in the public mailing list archive): where are you downloading to? Ie a cluster, a laptop, a workstation? What OS (Linux, Windows, Linux Subsystem for Windows, macOS using homebrew, macOS using macports)? What connection (internet at home, a university)? Which country?
Yours, Roland
It worked. Thanks for your help.
On Tue, Oct 26, 2021, 6:28 PM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
I am getting following error again and again
at ./GetComponents line 2733.
That is only a warning and does not cause GetComponents to abort.
It is caused by perl trying to output a wide (non ascii mostly) character. Eg if you have your language set to a non-English language and output of some program contains say a Greek letter α then you would get this warning when GetComponents tries to write that text to its log file.
Nothing aborts though so you can ignore this. Technical details are eg here:
https://www.perlmonks.org/?node_id=613765
Getting rid of it is complicated by the fact that we don't know what text encoding you are using (could be ASCII, could be UTF-8, could be latin1, ...) and getting that information in Perl requires an external module that I would rather not use in a basic tool like GetComponents (since the module may or may not exist on any given system).
Summary of Warnings:
Could not checkout module .clang-format
fatal: the remote end hung up unexpectedly fatal: early EOF fatal: index-pack failed
This, however is an actual error. Looking at the thornlist (einsteintoolkit.th)
!TARGET = $ROOT !TYPE = git !URL = https://bitbucket.org/cactuscode/cactus.git !NAME = flesh !CHECKOUT = .clang-format CONTRIBUTORS COPYRIGHT doc lib Makefile src
this is from the repository at https://bitbucket.org/cactuscode/cactus.git
And somehow bitbucket closes the connection when you try to download the repository.
I cannot say why this may be happening. Certainly we normally have no issues with BitBucket (GitHub is a bit more troublesome).
The only reason I can see would be too many connections to bitbucket or being blocked for some other reason (if e.g. bitbucket blocked all connections from some countries and you were in one of those countries).
All I can really suggest is to:
- check whether the repository (in repos/flesh since !NAME is flesh)
is complete or not (eg if "git status" works and there are files checked out) 2. if incomplete, try a "git pull" in there 3. if broken, remove the directory and run GetComponents once more (making very sure to use --no-parallel and not request updates of existing repositories) 4. if indeed complete, check that the various files listed in the CHECKOUT line exist as symbolic links in you main Cactus directory and point to the same named files in flesh. 5. if they don't try GetComponents once more (making very sure to use --no-parallel and not request updates of existing repositories) 6. if that does not help: create the symbolic links by hand
If all else fails, you could download on a system known to work (e.g. the tutorial server) tar up the Cactus directory and download the tarball (eg via jupyter's download file option). This is obviously not a very convenient solution.
You are trying this with --no-parallel, are you?
Out of curiosity (and you may want to reply only to me with these if you do not want this to appear in the public mailing list archive): where are you downloading to? Ie a cluster, a laptop, a workstation? What OS (Linux, Windows, Linux Subsystem for Windows, macOS using homebrew, macOS using macports)? What connection (internet at home, a university)? Which country?
Yours, Roland
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .
Hello Bilal,
It worked. Thanks for your help.
Glad that this could be sorted out.
Yours, Roland
Hello Bilal,
I tried 3 times but it's not working, maybe I have a weak internet connection. Still, I am trying to run this command.
Can you try passing the --no-parallel option to GetComponents? This will download repositories one after the other instead of trying to download several in parallel. It may help with bad internet connections and also make it more obvious if there are any errors that GetComponents reports.
Yours, Roland
It worked but still 3 components have issue,
----------------------------------------------------------------- 3 components checked out. 0 components updated.
Unable to process CactusWave/IDScalarWave Unable to process EinsteinAnalysis/ADMAnalysis Unable to process Lean/LeanBSSNMoL
Summary of Warnings:
Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
CalledProcessError: Command 'b'./GetComponents --no-parallel https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2021_05/einsteintoolki...'' returned non-zero exit status 1.
On Thu, Oct 21, 2021, 5:50 PM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
I tried 3 times but it's not working, maybe I have a weak internet connection. Still, I am trying to run this command.
Can you try passing the --no-parallel option to GetComponents? This will download repositories one after the other instead of trying to download several in parallel. It may help with bad internet connections and also make it more obvious if there are any errors that GetComponents reports.
Yours, Roland
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .
Hello Bilal,
Summary of Warnings:
Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
These three repositories (repos/cactuswave repos/einsteinanalysis repos/lean_public) were left in an invalid state due to previous failures it seems.
You can manually delete them using
rm -rf repos/cactuswave repos/einsteinanalysis repos/lean_public
and after that GetComponents should be able to download fresh, error free copies.
Alternatively you can also remove the full failed Cactus checkout ie:
rm -rf Cactus
and try once more from scratch using the --no-parallel option.
Yours, Roland
Dear Roland, I used rm -rf Cactus
then Getcomponent --no-parallel
worked properly but one repository is not downloading, I also tried
rm -rf repose/EinsteinAnalysis
Still not working.
1 components checked out. 0 components updated.
Unable to process EinsteinAnalysis/ADMAnalysis
Summary of Warnings:
Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
On Thu, Oct 21, 2021 at 6:13 PM Roland Haas rhaas@illinois.edu wrote:
Hello Bilal,
Summary of Warnings:
Could not update cactuswave. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '. Could not update lean_public. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
These three repositories (repos/cactuswave repos/einsteinanalysis repos/lean_public) were left in an invalid state due to previous failures it seems.
You can manually delete them using
rm -rf repos/cactuswave repos/einsteinanalysis repos/lean_public
and after that GetComponents should be able to download fresh, error free copies.
Alternatively you can also remove the full failed Cactus checkout ie:
rm -rf Cactus
and try once more from scratch using the --no-parallel option.
Yours, Roland
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .
Hello Bilal,
Could not update einsteinanalysis. Could not stash local changes. Error message was 'You do not have the initial commit yet '.
In that case I would try and remove only the repository that has errors (repos/einsteinanalysis) and then run GetComponents again. This way at least it should make progress even if in your case there is always a certain fraction of the repositories that cause problems.
If you don't mind, where are you trying to download from? Your laptop or a cluster (which one, located where)?
Yours, Roland
users@lists.einsteintoolkit.org
-
Bilal Hameed -
Roland Haas