Trac September 2011

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[Einstein Toolkit] #339: ExternalLibraries/OpenSSL does not compile in 64-bit mode on Mac OS
by Einstein Toolkit 23 Apr '12

23 Apr '12

#339: ExternalLibraries/OpenSSL does not compile in 64-bit mode on Mac OS ---------------------------------------+------------------------------------ Reporter: hinder | Owner: Type: defect | Status: new Priority: major | Milestone: Component: Cactus | Version: Keywords: ExternalLibraries/OpenSSL | ---------------------------------------+------------------------------------ Compiling OpenSSL using ExternalLibraries leads to the following warning, followed by a build failure: + cd openssl-1.0.0d + ./config --prefix=/Users/ian/Cactus/et/configs/fink/scratch/external/OpenSSL Operating system: i686-apple-darwinDarwin Kernel Version 10.6.0: Wed Nov 10 18:13:17 PST 2010; root:xnu-1504.9.26~3/RELEASE_I386 WARNING! If you wish to build 64-bit library, then you have to invoke './Configure darwin64-x86_64-cc' *manually*. You have about 5 seconds to press Ctrl-C to abort. Configuring for darwin-i386-cc I don't know how to detect that the compiler is building in 64-bit mode in order to add the corresponding flag to the Configure line. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/339> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #430: Convert all parameter files, examples, and test cases to EOS_Omni
by Einstein Toolkit 17 Apr '12

17 Apr '12

#430: Convert all parameter files, examples, and test cases to EOS_Omni -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: | -----------------------------------+---------------------------------------- Now that EOS_Omni is standard, we should convert all parameter files. At the moment, these parameter files still reference EOS_Base: EinsteinInitialData/TOVSolver/test/test_one_boost_max/test_one_boost_max.par EinsteinInitialData/TOVSolver/test/test_one_static_max/test_one_static_max.par EinsteinInitialData/TOVSolver/test/test_tov_carpet/test_tov_carpet.par EinsteinInitialData/TOVSolver/test/test_two_av/test_two_av.par EinsteinInitialData/TOVSolver/test/test_two_max/test_two_max.par LSUDevelopment/Refluxing/par/GRHydro_Carpet_Shocktube_base_works_with_gitCarpet.par The Refluxing parameter file is for reference only and should be remove now that hg Carpet is the default. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/430> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #493: All checkpoint files used in test suite need to be regenerated to work with development Carpet
by Einstein Toolkit 17 Apr '12

17 Apr '12

#493: All checkpoint files used in test suite need to be regenerated to work with development Carpet --------------------+------------------------------------------------------- Reporter: hinder | Owner: eschnett Type: defect | Status: new Priority: minor | Milestone: Component: Carpet | Version: Keywords: | --------------------+------------------------------------------------------- The current stable and development (git and mercurial) versions of Carpet use incompatible checkpoint file formats. Neither can read the checkpoints generated by the other (http://lists.einsteintoolkit.org/pipermail/users/2011-August/001299.html). The tests checkpointML, recoverML, CarpetWaveToyNewRecover_test_1proc and CarpetWaveToyRecover_test_1proc need to have their checkpoint files regenerated. At this point, it is likely that these tests will start to fail for the stable version of Carpet, but making the stable version read these files would be more effort than it is worth. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/493> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #492: Cannot add attachments to tickets "IOError: Client read error (Timeout?) "
by Einstein Toolkit 17 Apr '12

17 Apr '12

#492: Cannot add attachments to tickets "IOError: Client read error (Timeout?) " ----------------------------------+----------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit trac | Version: Keywords: | ----------------------------------+----------------------------------------- This evening I am unable to add attachments to any tickets. After selecting the attachment file, clicking on the button to actually upload it leads to the error message below. This has happened before, but in those cases the attachment was added successfully despite the error message. In this case, no attachment appears. I have tried several times, and none of them worked. Mod_python error: "PythonHandler trac.web.modpython_frontend" Traceback (most recent call last): File "/usr/lib64/python2.4/site-packages/mod_python/apache.py", line 299, in HandlerDispatch result = object(req) File "/usr/lib/python2.4/site-packages/trac/web/modpython_frontend.py", line 149, in handler gateway.run(dispatch_request) File "/usr/lib/python2.4/site-packages/trac/web/wsgi.py", line 89, in run response = application(self.environ, self._start_response) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 481, in dispatch_request return _dispatch_request(req, env, env_error) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 557, in _dispatch_request send_internal_error(env, req, sys.exc_info()) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 635, in send_internal_error description_en = get_description(lambda s, **kw: safefmt(s, kw)) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 631, in get_description req_args=pformat(req.args), sys_info=sys_info, File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 212, in __getattr__ value = self.callbacks[name](self) File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 195, in 'args': lambda req: arg_list_to_args(req.arg_list), File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 212, in __getattr__ value = self.callbacks[name](self) File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 560, in _parse_arg_list fs = cgi.FieldStorage(fp, environ=self.environ, keep_blank_values=True) File "/usr/lib64/python2.4/cgi.py", line 526, in __init__ self.read_multi(environ, keep_blank_values, strict_parsing) File "/usr/lib64/python2.4/cgi.py", line 646, in read_multi environ, keep_blank_values, strict_parsing) File "/usr/lib64/python2.4/cgi.py", line 528, in __init__ self.read_single() File "/usr/lib64/python2.4/cgi.py", line 661, in read_single self.read_lines() File "/usr/lib64/python2.4/cgi.py", line 683, in read_lines self.read_lines_to_outerboundary() File "/usr/lib64/python2.4/cgi.py", line 710, in read_lines_to_outerboundary line = self.fp.readline() File "/usr/lib/python2.4/site-packages/trac/web/modpython_frontend.py", line 50, in readline return self.req.readline(size) IOError: Client read error (Timeout?) -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/492> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #533: Want graphical TRAC statistics
by Einstein Toolkit 17 Apr '12

17 Apr '12

#533: Want graphical TRAC statistics -------------------------+-------------------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: optional | Milestone: Component: Other | Version: Keywords: | -------------------------+-------------------------------------------------- It would be nice to have a few graphs on the TRAC front page showing some statistics, e.g. number of important open tickets, mean time before a ticket is closed, etc. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/533> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #358: FAQ entry
by Einstein Toolkit 17 Apr '12

17 Apr '12

#358: FAQ entry ----------------------------+----------------------------------------------- Reporter: knarf | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus website | Version: Keywords: | ----------------------------+----------------------------------------------- For a new FAQ: Q: I get errors like "/usr/include/H5Dpublic.h:145: error: too many arguments to function ‘hid_t H5Dopen1(hid_t, const char*)’" A: The HDF5 library you use is either version 1.6 or defaults to it. If it is version 1.6.x, update to 1.8.x. If it is 1.8.x and it defaults to the 1.6 API version, you might be out of luck, especially on Debian Squeeze systems, see http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=537414. What you can then do is to remove (comment) out the macro H5_USE_16_API_DEFAULT in /usr/include/H5pubconf.h. This isn't pretty, but is really a bug in the package and has to be fixed there. There is no way to switch to the new API on those systems, other than specifying the API version of each symbol separately, which would be even messier. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/358> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #576: Einstein toolkit installation problems
by Einstein Toolkit 17 Apr '12

17 Apr '12

#576: Einstein toolkit installation problems -----------------------------+---------------------------------------------- Reporter: Vassilios Mewes | Type: defect Status: new | Priority: major Milestone: | Component: Other Version: ET_2011_05 | Keywords: fortran 77 compilation errors -----------------------------+---------------------------------------------- Hello! I am trying to install the Einstein toolkit. I followed the instructions on the wiki (improved tutorial for new users) i am using the following command to build the configuration: ./simfactory/bin/sim build firsttry --thornlist=manifest/einsteintoolkit.th --optionlist=/home/vass/.cactus/config there are compilation errors of F77 sourcefiles, i tried both gfortran and the older g77 compiler, both give me numerous errors. I am using Ubuntu 11.04 x64... this is my configuration file (for some reason, cactus won't find gfortran unless i specify it in the configuration file, which i believe it should?): CPP = cpp FPP = cpp CC = gcc CXX = g++ F77 = gfortran F90 = gfortran ffppflags= -traditional MPI=OpenMPI here are the error messages when trying to build: above here it is building zlib and HDF5 and so on..i think these are all build correctly.. Checking consistency... Creating Thorn-Flesh bindings... Creating implementation bindings... Creating parameter bindings... Creating variable bindings... Creating schedule bindings... Creating function bindings... CST finished. Checking status of thorn Boundary ________________________________________________________________________ Checking status of thorn CoordBase ________________________________________________________________________ ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn ADMCoupling ________________________________________________________________________ Checking status of thorn ADMMacros ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn AEILocalInterp ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn BLAS ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn Fortran ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetLib ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn IOUtil ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetEvolutionMask ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn zlib ________________________________________________________________________ ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetMask ________________________________________________________________________ Checking status of thorn GSL ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetTracker ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn Constants ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CoordGauge ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn SphericalSurface ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn DistortedBHIVP ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn EOSG_Base ________________________________________________________________________ Preprocessing /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/DistortedBHIVP.F ________________________________________________________________________ Compiling /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/DistortedBHIVP.F Preprocessing /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/Stab3d.F Compiling /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/Stab3d.F /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:476.6: 123 format(1x, 'Pars: amp',f8.5,' eta0',f8.5,' c',f8.5,' sigma',f8.5,' 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:476.6: 123 format(1x, 'Pars: amp',f8.5,' eta0',f8.5,' c',f8.5,' sigma',f8.5,' 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:477.6: &n',i3) 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:477.6: &n',i3) 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:519.2: qf(i,j,k) = amp*(1.00000000000000d0+c*cos(phigrd(k))**2)* 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:521.72: $ /sigma**2)))*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:522.2: qfetaeta(i,j,k) = amp*(1.00000000000000d0+c*cos(phigrd(k)) 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:529.72: $ )*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:530.2: qfqq(i,j,k) = amp*(-1.00000000000000d0+n)*n*(1.00000000 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:538.72: $ /sigma**2)))*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:539.2: qfphi(i,j,k) = -2.00000000000000d0*amp*c*cos(phigrd(k))*(exp(- 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:542.72: $ )*sin(phigrd(k))*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:543.2: qfphiphi(i,j,k) = -2.00000000000000d0*amp*c*cos(phigrd(k))**2* 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:548.72: $ sin(phigrd(k))**2*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:105.6: 10 call usermv(cc,cn,cs,ce,cw,ct,cb,x,Ap,im,jm,km) 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:105.6: 10 call usermv(cc,cn,cs,ce,cw,ct,cb,x,Ap,im,jm,km) 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:138.4: 1 continue 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:138.4: 1 continue 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:181.72: goto 10 1 Error: Label 10 referenced at (1) is never defined /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:181.72: goto 10 1 Error: Label 10 referenced at (1) is never defined /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:194.72: if (rnorm .gt. tol) goto 1 1 Error: Label 1 referenced at (1) is never defined make[3]: *** [Stab3d.F.o] Error 1 make[3]: *** Waiting for unfinished jobs.... /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:1289.6: 110 continue 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:1289.6: 110 continue 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:474.17: write(*,123)amp,eta0,c,sigma,n 1 Error: FORMAT label 123 at (1) not defined Checking status of thorn EOSG_Polytrope ________________________________________________________________________ make[3]: *** [DistortedBHIVP.F.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/home/vass/Cactus/configs/firsttry/lib/libthorn_DistortedBHIVP.a] Error 2 make[1]: *** Waiting for unfinished jobs.... as thornlist i am using the einsteintoolkit.th thornlist as downloaded. the compilation errors are not exclusive to the distortedBHIVP file, when i comment this file to be build in the thornlist, other files won't be compiled as well... might be a system error, as i already had problems downloading the toolkit, it wouldn't download completely, but left out LocalInterp and LocalReduce for some strange reason. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/576> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #547: WALLTIME_HOURS incorrect
by Einstein Toolkit 09 Apr '12

09 Apr '12

#547: WALLTIME_HOURS incorrect ------------------------+--------------------------------------------------- Reporter: hinder | Owner: eschnett Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- The SimFactory variable WALLTIME_HOURS should be expanded to the walltime of the job, not the walltime which was requested on the command line. If the user specifies more walltime than the queue allows, SimFactory splits the job into several restarts to give the total walltime requested. However, parameter files expect WALLTIME_HOURS to be the walltime of the job, not of the simulation. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/547> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #221: Simfactory should complain about unused arguments
by Einstein Toolkit 20 Mar '12

20 Mar '12

#221: Simfactory should complain about unused arguments ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- When more arguments are given to simfactory that it uses, it should complain with an error message. For example, "sim stop sim1 sim2" stops simulation sim1 and ignores the argument sim2. Instead, it should output an error message if the argument sim2 is ignored. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/221> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #558: Carpet with Periodic Boundary Conditions
by Einstein Toolkit 08 Feb '12

08 Feb '12

#558: Carpet with Periodic Boundary Conditions -----------------------------+---------------------------------------------- Reporter: hfinkel@… | Owner: eschnett Type: enhancement | Status: new Priority: major | Milestone: Component: Carpet | Version: Keywords: carpet periodic | -----------------------------+---------------------------------------------- The current Carpet driver is not compatible with the periodic boundary conditions (as provided by the Periodic thorn or otherwise). Erik's comment on the User's list was: "It is straightforward to implement periodicity in the grid structure -- one needs to take the current grid structure, shift it in the 26 directions, and take the logical union of all 27 grid structures. This will then be automatically clipped. The most complex part is calculating by how much to shift." Please implement support for periodic BCs in Carpet. This will directly enable production science runs. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/558> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac September 2011