Trac May 2012

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239 discussions

[Einstein Toolkit] #820: close all HDF5 objects in EOS Omni table reader
by Einstein Toolkit 16 May '12

16 May '12

#820: close all HDF5 objects in EOS Omni table reader -------------------+-------------------------------------------------------- Reporter: rhaas | Type: defect Status: new | Priority: minor Milestone: | Component: EinsteinToolkit thorn Version: | Keywords: -------------------+-------------------------------------------------------- hdf5 does not automatically close all object handles of objects in a file if one closes the (last) file handle. This could potentially lead hdf5 to leave metadata in memory (and it is just not tidy to leave open objects around) -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/820> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #899: Push testsuite results to a git repository
by Einstein Toolkit 16 May '12

16 May '12

#899: Push testsuite results to a git repository -------------------------+-------------------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: major | Milestone: Component: Cactus | Version: Keywords: | -------------------------+-------------------------------------------------- Implement a mechanism that pushes testsuite results to a repository, similar to the way in which Formaline pushes the source tree while building. This could be implemented in Cactus (after running the tests), or in Simfactory (during cleanup). It is probably preferable to have this in Cactus. As with Formaline, there would be a new repository created for each test suite run. This repository would be pushed to a (possibly remote) repository. It may be useful to have other repositories, e.g. one per source tree, and one per machine, as intermediate "collectors". Such intermediate repositories reduce the amount of data that need to be transmitted to a remote server, and act a buffer that retain information in case (a) the remote repository is not accessible while (b) a local repository is deleted. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/899> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #281: compile error is not linked
by Einstein Toolkit 16 May '12

16 May '12

#281: compile error is not linked --------------------+------------------------------------------------------- Reporter: knarf | Owner: sbrandt Type: defect | Status: new Priority: minor | Milestone: Component: Moyave | Version: Keywords: | --------------------+------------------------------------------------------- Info: Simfactory command: /home/knarf/utils/simfactory/lib/sim.py "build" "sim" "--thornlist" "NewSchedule/NewSchedule.th" "--optimise" Info: Version 1195M The Simulation Factory: Manage Cactus simulations Info: defs: /home/knarf/utils/simfactory/etc/defs.ini Info: defs.local: /home/knarf/utils/simfactory/etc/defs.local.ini Info: Executing command: build Using configuration: sim Info: Cactus Directory: /home/knarf/Cactus_NewSchedule Info: HasStoredOptions: True Info: Use stored options list: /home/knarf/Cactus_NewSchedule/configs/sim/OptionList Info: optionlist is: /home/knarf/Cactus_NewSchedule/configs/sim/OptionList Info: hasOutdatedConfig: False Info: build_reconfig: False Info: build_clean: False Info: removeConfig: False SubmitScript is: None Info: RunScript is: /home/knarf/utils/simfactory/mdb/runscripts/debian- lenny-gcc.sh Info: ThornList is: /home/knarf/Cactus_NewSchedule/NewSchedule/NewSchedule.th Building sim ________________________________________________________________________ Cactus - version: 4.0.b17 Building configuration sim ________________________________________________________________________ Checking status of thorn BLAS ________________________________________________________________________ Checking status of thorn Boundary ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn Vectors ________________________________________________________________________ /home/knarf/Cactus_NewSchedule/arrangements/CactusBase/Boundary/src/Check.c:18:2: error: #error "die" Preprocessing /home/knarf/Cactus_NewSchedule/arrangements/CactusBase/Boundary/src/Check.c Compiling /home/knarf/Cactus_NewSchedule/arrangements/CactusBase/Boundary/src/Check.c Checking status of thorn IOUtil ________________________________________________________________________ ________________________________________________________________________ /home/knarf/Cactus_NewSchedule/arrangements/CactusBase/Boundary/src/Check.c:18:2: error: #error "die" make[3]: *** [Check.c.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/home/knarf/Cactus_NewSchedule/configs/sim/lib/libthorn_Boundary.a] Error 2 make[1]: *** Waiting for unfinished jobs.... ________________________________________________________________________ make[1]: *** wait: No child processes. Stop. make: *** [sim] Error 2 Info: executing command: /bin/bash -c '{ :; } && { cd /home/knarf/Cactus_NewSchedule && nice make -j3 sim 2>&1; }' Error while executing command "/bin/bash -c '{ :; } && { cd /home/knarf/Cactus_NewSchedule && nice make -j3 sim 2>&1; }'": Command returned exit status 2 -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/281> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #898: use characteristic speed +/-c for Bx in HLLEM
by Einstein Toolkit 16 May '12

16 May '12

#898: use characteristic speed +/-c for Bx in HLLEM -----------------------------------+---------------------------------------- Reporter: rhaas | Owner: Type: enhancement | Status: new Priority: major | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: GRHydro | -----------------------------------+---------------------------------------- the attached patch (against trunk) adds a new parameter decouple_normal_Bfield which defaults to yes (and changes the default behaviour) to GRHydro's MHD code when divergence cleaning is used. Reasons for this are given eg in Mignonoe et al. arXiv:1001.2832v2 section 3.1. This patch allows us to run the rotor test without having to resort to the LLF flux formula (which also uses +/- characteristic speed but for all variables) and does not seem to cause any problems in the TOV tests that Philipp ran. Bruno says it helps with the cylindrical blast as well. Ok to include in the release (given that it is tunable at runtime) even though we are in the "no major change" phase? -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/898> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #814: Allow different timers on different processors in TimerReport
by Einstein Toolkit 16 May '12

16 May '12

#814: Allow different timers on different processors in TimerReport -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: | -----------------------------------+---------------------------------------- This patch reduces not just timer values, but also timer names across processes. This allows different processes to have different timers. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/814> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #901: bashism in ThornDoc
by Einstein Toolkit 16 May '12

16 May '12

#901: bashism in ThornDoc --------------------+------------------------------------------------------- Reporter: knarf | Owner: Type: defect | Status: new Priority: minor | Milestone: ET_2012_05 Component: Cactus | Version: development version Keywords: | --------------------+------------------------------------------------------- ThornDoc uses '==' within 'test' to test for something being equal. However, for shell scripts this should be '='. This works in bash, since it also accepts '==', but it does not work for /bin/sh by default, which is what ThornDoc claims to be a script for. The effect is that 'make THORN-ThornDoc' prints a lot of warnings. The attached patch fixes this by replacing '==' with '='. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/901> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #824: Update tests which rely on BSSN_MoL to use ML_BSSN instead
by Einstein Toolkit 15 May '12

15 May '12

#824: Update tests which rely on BSSN_MoL to use ML_BSSN instead ------------------------+--------------------------------------------------- Reporter: hinder | Owner: Type: task | Status: new Priority: major | Milestone: ET_2012_05 Component: Other | Version: Keywords: testsuites | ------------------------+--------------------------------------------------- BSSN_MoL is not part of the toolkit. Many thorns which are part of the toolkit have tests which rely on BSSN_MoL. These tests currently do not run. In order to test these thorns, the tests should be updated to use ML_BSSN instead of BSSN_MoL. Correctness-testing the new results (which will be different due to differences in the implementation of BSSN) is problematic. I propose that if the tests run with ML_BSSN and do not generate NaNs or poison, we should just commit the new test data. These are only regression tests anyway - there is no formal correctness-testing framework. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/824> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #897: Hydro_InitExcision tests failing
by Einstein Toolkit 15 May '12

15 May '12

#897: Hydro_InitExcision tests failing -----------------------------------+---------------------------------------- Reporter: rhaas | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: Hydro_InitExcision | -----------------------------------+---------------------------------------- with the atmosphere fixes from r332 of GRHydro the following Hydro_InitExcision tests started to fail: * diag_pugh_tvd (from Hydro_InitExcision) * halfsphere_pugh_ppm (from Hydro_InitExcision) * halfsphere_pugh_tvd (from Hydro_InitExcision) * sphere_pugh_tvd (from Hydro_InitExcision) * x_pugh_tvd (from Hydro_InitExcision) the attached patch regenerates the data. I have checked that reverting the GRHydro patch makes the tests pass. Ok to apply? -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/897> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #893: WeylScal4 teukolskyID test is failing
by Einstein Toolkit 14 May '12

14 May '12

#893: WeylScal4 teukolskyID test is failing -----------------------------------+---------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: major | Milestone: ET_2012_05 Component: EinsteinToolkit thorn | Version: Keywords: WeylScal4 testsuite | -----------------------------------+---------------------------------------- The test WeylScal4/teukolskyID started failing on 13-May-2012. See http://damiana2.aei.mpg.de/~ianhin/testsuites/einsteintoolkit/, specifically http://damiana2.aei.mpg.de/~ianhin/testsuites/einsteintoolkit/einsteintoolk… One of the following commits is probably responsible: simfactory Correction (eschnett, Sun, 13 May 2012 03:20:57 +0000) (details) simfactory Support Titan, the Perimeter HPC system (eschnett, Sat, 12 May 2012 22:32:04 +0000) (details) arrangements/EinsteinAnalysis/AHFinderDirect Support CCTK_REAL4 (eschnett, Sat, 12 May 2012 00:40:26 +0000) (details) flesh Clean up CCTK_GFINDEX definitions (eschnett, Sat, 12 May 2012 00:41:49 +0000) (details) repos/carpet CarpetLib: disable debug output (Roland Haas, Wed, 9 May 2012 16:56:06 -0700) (details) arrangements/CactusNumerical/Periodic Add parameter to poison periodic boundaries (eschnett, Fri, 11 May 2012 23:20:57 +0000) (details) arrangements/EinsteinBase/ADMBase Allow different boundary conditions in ADMBase (eschnett, Fri, 11 May 2012 23:15:39 +0000) (details) arrangements/EinsteinEvolve/GRHydro Support real*16 (and real*4) in GRHydro (eschnett, Fri, 11 May 2012 22:46:36 +0000) (details) arrangements/EinsteinEvolve/GRHydro GRHydro: correct reconstruction of velocities in ePPM (rhaas, Fri, 11 May 2012 22:17:18 +0000) (details) repos/carpet Remove all #warning statements (Erik Schnetter, Fri, 11 May 2012 13:43:32 -0400) (details) CarpetLib: Correct determining overlap zones (Erik Schnetter, Fri, 11 May 2012 12:55:38 -0400) (details) CarpetLib: Correct determining buffer and overlap zones (Erik Schnetter, Fri, 11 May 2012 12:52:59 -0400) (details) LoopControl: Explain why downcast is safe (Erik Schnetter, Fri, 11 May 2012 12:52:09 -0400) (details) arrangements/CactusNumerical/SphericalSurface Use cast to avoid warning. Comment out unused variable. (eschnett, Fri, 11 May 2012 16:34:56 +0000) (details) arrangements/CactusPUGH/PUGHReduce Remove unused variables (eschnett, Fri, 11 May 2012 16:50:05 +0000) (details) arrangements/EinsteinInitialData/NoExcision Remove #warning (eschnett, Fri, 11 May 2012 16:50:34 +0000) (details) flesh Declare string array as "const char*" (eschnett, Fri, 11 May 2012 16:50:51 +0000) (details) arrangements/CactusBase/IOUtil Remove unused variable (eschnett, Fri, 11 May 2012 16:31:42 +0000) (details) -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/893> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #848: McLachlan "NewRad" radiative boundary condition does not consider conformalMethod
by Einstein Toolkit 14 May '12

14 May '12

#848: McLachlan "NewRad" radiative boundary condition does not consider conformalMethod -----------------------+---------------------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: Other | Version: Keywords: McLachlan | -----------------------+---------------------------------------------------- In ML_BSSN_Helper/src/NewRad.c, the newrad function is called with a background value of 0 for the phi variable, independently of the setting of conformalMethod. For conformalMethod = 1, the background value should be 1. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/848> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac May 2012